View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21098_low_3 (Length: 400)
Name: NF21098_low_3
Description: NF21098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21098_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 17 - 384
Target Start/End: Complemental strand, 29563759 - 29563392
Alignment:
| Q |
17 |
aaaggaatcagaatacccnnnnnnnatgagtgagaaaactcatcactaataactactaaagattcttgaaaagacccacttgatcnnnnnnntgagagaa |
116 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
29563759 |
aaaggaatcagaataccctttttttatgagtgagaaaactcatcactaataactactaaagaatcttgaaaagacccacttgatcaaaaaaatgagagaa |
29563660 |
T |
|
| Q |
117 |
aaattaccaaatttaaagaagattattatctcttatctaattggtcttagaagaaaaatacttaaaacccttttaagatctcaaatcaattaacttcaat |
216 |
Q |
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|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29563659 |
aatttaccaaatttaaagaaaattattatctcttatctaattggtcttagaagaaaaatacttaaaacccttttaagatctcaaatcaattaacttcaat |
29563560 |
T |
|
| Q |
217 |
tgagaaaaatagcagtaacccgnnnnnnnnnnnnnctataaattgcttataattttaagtatagcaacnnnnnnnntgannnnnnnagtgagaaaatggn |
316 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
29563559 |
tgagaaaaatagcagtaacccgaaaaataaaaaaactataaattgcttataattttaagtatagcaacaaaaaaaatgatttttttagtgagaaaatggt |
29563460 |
T |
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| Q |
317 |
nnnnnnctttctgcagcttaacttgaaaacttagcccaatttggaaaacagttgagaaggaagaaaag |
384 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29563459 |
ttttttctttctgcagcttaacttgaaaacttagcccaatttggaaaacagttgagaaggaagaaaag |
29563392 |
T |
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