View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21098_low_4 (Length: 358)
Name: NF21098_low_4
Description: NF21098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21098_low_4 |
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| [»] scaffold0029 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 13 - 356
Target Start/End: Complemental strand, 48446811 - 48446469
Alignment:
| Q |
13 |
atatacacatgtacatacataccctgatgagactgagaaggaggcaagaaatgaatgaatgtaacagaacagaagtaagtatctccccaaaagaacagaa |
112 |
Q |
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| T |
48446811 |
atatacacatgtacatacataccctgatgagactgagaaggaggcaagaaatgaatgaatgtaaaagaacagaagtaagtatctccccaaaagaacagaa |
48446712 |
T |
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| Q |
113 |
catgcacagatgaaataacaatatgatcaagctccgacaatggagtctaaggttttaaccaatggtgtgtatattggagaatcttgtttgtgtctctctc |
212 |
Q |
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| T |
48446711 |
catgctcagatgaaataacaatatgatcaagctccgacaatggtgtctaaggttttaaccaatggtgtgtatattggagaatcttgtttgtgtctctctc |
48446612 |
T |
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| Q |
213 |
cnnnnnnnatttatatatagtgtgacaattggtatactgaaatgagattcagatgcaaaatgactactaataaaataatgaaatgcaagtgaccatacac |
312 |
Q |
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| T |
48446611 |
c-ttttttatttatatatagtgtgacaattggtatactgagatgagattcagatgcaaaatgactactaataaaataatgaaatgcaagtgaccacacac |
48446513 |
T |
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| Q |
313 |
acagcgaaacctcgctctctctgcgtctgattcctgtgtctgtg |
356 |
Q |
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| T |
48446512 |
acagcgaaacctcgctctctctgcgtctgattcctgtgtctgtg |
48446469 |
T |
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Target: scaffold0029 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 311 - 356
Target Start/End: Complemental strand, 55142 - 55097
Alignment:
| Q |
311 |
acacagcgaaacctcgctctctctgcgtctgattcctgtgtctgtg |
356 |
Q |
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| T |
55142 |
acacagcgaaacctcgctctctctgcgtctgattcttgtgtctgtg |
55097 |
T |
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