View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21098_low_5 (Length: 343)
Name: NF21098_low_5
Description: NF21098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21098_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 339
Target Start/End: Complemental strand, 35875774 - 35875452
Alignment:
| Q |
18 |
aatatcaatcacctcact--tagctggatcaaagagagtattcgactatctcatgtcgagtagtgtgaagaagaaataggtagattgttattataaaaat |
115 |
Q |
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| T |
35875774 |
aatatcaatcacctctctcttagctggatcaaagagagtattcgactatctcatgtcgagtagtgtgaagaagaaataggtagattgttattataaaaat |
35875675 |
T |
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| Q |
116 |
gaaaagttaatttgagttttttcatcaaaacatttccagtctcttgaatgtactgaatgtttggatagttgtatgtcatgagagagtttttgcaattttc |
215 |
Q |
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| T |
35875674 |
ggaaagttaatttgagttttttcatcaaaacatctccagtctcttgaatgtactgaatgtttggatagttgtatgtcatgagagagtttttgcaattttc |
35875575 |
T |
|
| Q |
216 |
tcatgcaagacttataattgagaggtttgcgattttgttcttttgaaaattgcaattgtgtgaaagttaaagagaatttgtaattttataaatatttgca |
315 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
35875574 |
tcatgcaagacttataattgagaggtttgcaattttgttcttttgaaaattgcaattgtgtgaaagtt-aagaatatttgtaattttataaatatttgca |
35875476 |
T |
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| Q |
316 |
attttcctatatattttgcttctt |
339 |
Q |
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|||||| ||||||||||||||||| |
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| T |
35875475 |
attttcatatatattttgcttctt |
35875452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 204 - 278
Target Start/End: Original strand, 1649047 - 1649121
Alignment:
| Q |
204 |
tttgcaattttctcatgcaagacttataattgagaggtttgcgattttgttcttttgaaaattgcaattgtgtga |
278 |
Q |
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| T |
1649047 |
tttgtaattttatcgtgcaaaaattaaaattgagaggtttgcgattatgttcttataaaaattgcaattgtgtga |
1649121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 135
Target Start/End: Complemental strand, 52349172 - 52349108
Alignment:
| Q |
71 |
tcgagtagtgtgaagaagaaataggtagattgttattataaaaatgaaaagttaatttgagtttt |
135 |
Q |
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|||||||||| |||||| ||| ||||| | |||||||||||| ||| | |||||||||||||||| |
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| T |
52349172 |
tcgagtagtgagaagaaaaaagaggtaaaatgttattataaatatggagagttaatttgagtttt |
52349108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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