View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21099_high_1 (Length: 760)
Name: NF21099_high_1
Description: NF21099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21099_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 723; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 723; E-Value: 0
Query Start/End: Original strand, 16 - 750
Target Start/End: Complemental strand, 11360054 - 11359320
Alignment:
| Q |
16 |
aaatgtgtaaagaaaatttgcatcaatgcaatttgtgaagtcccattctctactcttacatctcactaccttttttatcattccaattatttagaagaat |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11360054 |
aaatgtgtaaagaaaatttgcatcaatgcaatttgtgaagtcccattctctactcttacatctcactaccttttttatcattccaattatttagaagaat |
11359955 |
T |
|
| Q |
116 |
tggtgcttaagatgtgttgttgtgctatcaaagttcctccaagttcttatggttattttacttttggaagccttaaagttctcaacttgtgtgctattat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11359954 |
tggtgcttaagatgtgttgttgtgctatcaaagttcctccaagttcttatggttattttacttttggaagccttaaagttctcaacttgtgtgctattat |
11359855 |
T |
|
| Q |
216 |
atttaccattgaggaatctctagttattcatttaccagtattgacaaagtttaagacaaaaaactgcttatggttaagtgcttatgatgtcactgttgaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11359854 |
atttaccattgaggaatctctagttattcatttaccagtattgacaaagtttaagacaaaaaactgcttatggttaagtgcttatgatgtcactgttgaa |
11359755 |
T |
|
| Q |
316 |
gcgcctcggcttaaaactgtttgcataaaagaagactttaagccgttgactcgggagctacgtagctgcaaaatcaaattttctgcttcatgtttgaaag |
415 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11359754 |
gcgcctcggcttaaaactgtttgcataaaagaagactttaagccgttgactcgggagctacgtagctgcaaaatcaaattttctgcttcatgtttgaaag |
11359655 |
T |
|
| Q |
416 |
aattcacttattgtggtcatgatggcataatgcaacccattgttttgtcgaatccatcagtagcttatgatgcttatgttaacatcattatctataagcg |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11359654 |
aattcacttattgtggtcatgatggcataatgcaacccattgttttgtcgaatccatcagtagcttatgatgcttatgttaacatcattatctataagcg |
11359555 |
T |
|
| Q |
516 |
tgggagtattgttgatcgagaaattggatcaggtgcttgtctccttgttaaacaattcagtcaagtgaagtgtatcaaatttcatatatggggggaggta |
615 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11359554 |
tgggagtattgttgatcgagaaattggatcaagtgcttgtctccttcttaaacaattcagtcaagtgaagtgtatcaaatttcatatatggggggaggta |
11359455 |
T |
|
| Q |
616 |
atactaaatcatctaacctaatgtaatcatgaatatgtaggcgcatgtttttaagcacggcattggtacttatacgagcgtcgttgattgaatgtaatta |
715 |
Q |
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| T |
11359454 |
atactaaatcatctaacctaatgtaatcatgaatatgtaggcgcatgtttttaagcacggcattggtacttatacgagcgtcgttgattgaatgtaatta |
11359355 |
T |
|
| Q |
716 |
tatgtgtcactgttagacaccacgacatgcctttg |
750 |
Q |
| |
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||||||||||||| ||||||||||||||||||||| |
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| T |
11359354 |
tatgtgtcactgtcagacaccacgacatgcctttg |
11359320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 61 - 155
Target Start/End: Original strand, 13543639 - 13543734
Alignment:
| Q |
61 |
ttctctactcttacatctcactaccttttttatcattccaattatttagaagaatt-ggtgcttaagatgtgttgttgtgctatcaaagttcctcc |
155 |
Q |
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|||||| ||||||||||||||| |||||| ||||| || || |||||||||||| ||| | |||||||||||||||||||||||||||||||| |
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| T |
13543639 |
ttctctgctcttacatctcactgccttttcaatcatgcctatactttagaagaatttggttttcaagatgtgttgttgtgctatcaaagttcctcc |
13543734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 1e-24; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 58 - 431
Target Start/End: Original strand, 30715889 - 30716265
Alignment:
| Q |
58 |
ccattctctactcttacatctcactaccttttttatcattccaattatttagaagaattggtgcttaagatgtgttgttgtgctatcaaagttcctccaa |
157 |
Q |
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||||||||| |||||||||||| || |||||| || || || |||||||||||||||||||||| |||||| |||||||||||||||| |||||||| |
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| T |
30715889 |
ccattctctgctcttacatctcgctcccttttcaataatgcctattatttagaagaattggtgctcaagatgcgttgttgtgctatcaatgttcctccct |
30715988 |
T |
|
| Q |
158 |
gttcttatggttattttacttttggaagccttaaagttctcaacttgtgtgctattatatttaccattgaggaatctctagttattcatttaccagtatt |
257 |
Q |
| |
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| ||| |||| || |||||||| || ||| | ||||| |||||| ||||||||||| ||||| ||||| || || | |||||| ||| | |
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| T |
30715989 |
gcggtta---ttatcatagttttggaaagctaaaactcctcaagctgtgtggaattatatttacaattgacaaatctataaagatccttttaccggtact |
30716085 |
T |
|
| Q |
258 |
gacaaagtttaagacaaaaaactgcttatggttaagtgcttatgatgtcactgttgaa------gcgcctcggcttaaaactgtttgcataaaagaagac |
351 |
Q |
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|| ||||||| ||||||||||||||| ||||||||||| ||| ||||||| | ||| || |||| ||| ||| ||||| ||| | |||| |
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| T |
30716086 |
gaaaaagtttgagacaaaaaactgctcttggttaagtgcacatgttgtcactttagaactaaaggcacctctacttgaaagtgtttttatagatcaagat |
30716185 |
T |
|
| Q |
352 |
tttaagccgttgactcgggagctacgtagctgcaaaatcaaattttctgcttcatgtttgaaagaattcacttattgtgg |
431 |
Q |
| |
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|| || || | ||||| |||| ||||| |||||||||||||||||||| |||| | |||||||||||||||||||||| |
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| T |
30716186 |
cttgagtcggttactcgtgagccacgtaactgcaaaatcaaattttctgattcaagcctgaaagaattcacttattgtgg |
30716265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 106 - 244
Target Start/End: Original strand, 30723629 - 30723770
Alignment:
| Q |
106 |
ttagaagaattggtgcttaagatgtgttgttgtgctatcaaagttcctcc---aagttcttatggttattttacttttggaagccttaaagttctcaact |
202 |
Q |
| |
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|||||||||||||| ||| ||||| |||||||| |||||||||||||||| |||||||||| | || || |||||||||||| || ||| |||| | |
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| T |
30723629 |
ttagaagaattggttcttgagatgcgttgttgttctatcaaagttcctccctgcagttcttatgatacttgtagttttggaagcctaaatgttatcaagt |
30723728 |
T |
|
| Q |
203 |
tgtgtgctattatatttaccattgaggaatctctagttattc |
244 |
Q |
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|||||| ||||| || ||||| || |||||||||| ||||| |
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| T |
30723729 |
tgtgtggaattatgttcaccatggatgaatctctaggtattc |
30723770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 375 - 431
Target Start/End: Original strand, 30723907 - 30723963
Alignment:
| Q |
375 |
acgtagctgcaaaatcaaattttctgcttcatgtttgaaagaattcacttattgtgg |
431 |
Q |
| |
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|||||||||||||||||| ||||||||||| ||| ||||||||||||||||| |||| |
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| T |
30723907 |
acgtagctgcaaaatcaagttttctgcttcgtgtatgaaagaattcacttatcgtgg |
30723963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 549 - 600
Target Start/End: Original strand, 30716377 - 30716428
Alignment:
| Q |
549 |
tgcttgtctccttgttaaacaattcagtcaagtgaagtgtatcaaatttcat |
600 |
Q |
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||||||||||||| | || ||||||||||||||||||||||| ||||||||| |
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| T |
30716377 |
tgcttgtctccttctcaatcaattcagtcaagtgaagtgtatgaaatttcat |
30716428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 534 - 600
Target Start/End: Original strand, 30709870 - 30709936
Alignment:
| Q |
534 |
agaaattggatcaggtgcttgtctccttgttaaacaattcagtcaagtgaagtgtatcaaatttcat |
600 |
Q |
| |
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||||| ||||||| || |||||||||| | ||| ||||||||||||| |||||||||||||||||| |
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| T |
30709870 |
agaaactggatcaaatgtttgtctccttctcaaagaattcagtcaagttaagtgtatcaaatttcat |
30709936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 548 - 597
Target Start/End: Original strand, 30724077 - 30724126
Alignment:
| Q |
548 |
gtgcttgtctccttgttaaacaattcagtcaagtgaagtgtatcaaattt |
597 |
Q |
| |
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|||||| ||| ||| | ||||||||||||||||||||||||||| ||||| |
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| T |
30724077 |
gtgcttctctacttctcaaacaattcagtcaagtgaagtgtatccaattt |
30724126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 61 - 155
Target Start/End: Original strand, 9678695 - 9678790
Alignment:
| Q |
61 |
ttctctactcttacatctcactaccttttttatcattccaattatttagaagaatt-ggtgcttaagatgtgttgttgtgctatcaaagttcctcc |
155 |
Q |
| |
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|||||| ||||||||||||||| |||||| ||||| || || |||||||||||| ||| | |||||||||||||||||||||||||||||||| |
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| T |
9678695 |
ttctctgctcttacatctcactgccttttcaatcatgcctatactttagaagaatttggttttcaagatgtgttgttgtgctatcaaagttcctcc |
9678790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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