View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21099_high_9 (Length: 240)
Name: NF21099_high_9
Description: NF21099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21099_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 15 - 223
Target Start/End: Original strand, 6454970 - 6455170
Alignment:
| Q |
15 |
aaaatataaggaaaaaacaagattaatgtannnnnnngcttatcttttattacaaggaagtataatataagtatatgattatggatcatgttaattaatt |
114 |
Q |
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| T |
6454970 |
aaaatataacgaaaaaacaagattaatgtatttttttgcttatcttttattacaaggaagtataatataagtat--------ggatcatgttagttaatt |
6455061 |
T |
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| Q |
115 |
gtgtaattaaacttgcaggagcaacaccaaaatctgtgttagagttaatgaatgtgaaggatctaaccctagcacacgtcaagagtcacttacaggtggg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6455062 |
gtgtaattaaacttgcaggagcaacaccaaaatctgtgttagagttaatgaatgtgaaggatctaaccctagcacacgtcaagagtcacttacaggtggg |
6455161 |
T |
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| Q |
215 |
gtaaactat |
223 |
Q |
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||||||||| |
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| T |
6455162 |
gtaaactat |
6455170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 211
Target Start/End: Complemental strand, 26579752 - 26579672
Alignment:
| Q |
131 |
aggagcaacaccaaaatctgtgttagagttaatgaatgtgaaggatctaaccctagcacacgtcaagagtcacttacaggt |
211 |
Q |
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|||||| || || ||||| || || ||| ||||| ||||||| |||||||| ||||| || ||||||||||| |||||||| |
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| T |
26579752 |
aggagctactcctaaatcagttttggagctaatggatgtgaaagatctaacactagctcatgtcaagagtcatttacaggt |
26579672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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