View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21099_low_3 (Length: 389)
Name: NF21099_low_3
Description: NF21099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21099_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 267 - 372
Target Start/End: Complemental strand, 13013425 - 13013319
Alignment:
| Q |
267 |
gtgagaaaaagag-tgatttaaatttaatattaaaattaggacgtaggttaaaagtattaaccttattgctgcaaccacgatttggacaatattcttgat |
365 |
Q |
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| T |
13013425 |
gtgagaaaaaaaggtgatttaaatttaatattaaaattaggacgtaggttaaaagtattaaccttattgctgcaaccacgatttggacaatactcttgat |
13013326 |
T |
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| Q |
366 |
caataag |
372 |
Q |
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| T |
13013325 |
caataag |
13013319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 2 - 168
Target Start/End: Complemental strand, 13013605 - 13013450
Alignment:
| Q |
2 |
cagaaattagattatggtacataagtaaaaagtcatatcaat---tatcagtatttaatatatattttcaatcaatacttataaaatatcttccgaaatt |
98 |
Q |
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| T |
13013605 |
cagaaattagattatggttcataagtaaa---tcatatcaatatttatcagtatttaatatatattttcaatcaatacttat-aaatatctcccaaaatt |
13013510 |
T |
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| Q |
99 |
aggtatcctaaaaaagtttagtgaacctaaaataaaaattttacctttttatcatagtttgaatgaaaaa |
168 |
Q |
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| T |
13013509 |
aggtatccta---------agtaaacctaaaatcaaaattttacc-ttttatcatagtttgaatgaaaaa |
13013450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 371
Target Start/End: Complemental strand, 49617110 - 49617028
Alignment:
| Q |
289 |
tttaatattaaaattaggacgtaggttaaaagtattaaccttattgctgcaaccacgatttggacaatattcttgatcaataa |
371 |
Q |
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| T |
49617110 |
tttaatattataattagaatgagggttaaaagtactaacctgattattgcaagcgctgtttggacaatattcttgatcaataa |
49617028 |
T |
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