View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21099_low_4 (Length: 381)
Name: NF21099_low_4
Description: NF21099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21099_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 16 - 363
Target Start/End: Complemental strand, 41351370 - 41351023
Alignment:
| Q |
16 |
atgaagtaaatctagggataaaataaatgatgagggggaaaaaatgcctaattaaatgctacaatccattcaactttaaaacagcaaaatcgttaaataa |
115 |
Q |
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| T |
41351370 |
atgaagaaaatctagggataaaataaatgatgagggggaaaaaatgcctaattaaatgctacaatccattcaacttaaaaacagcaaaatcgttaaataa |
41351271 |
T |
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| Q |
116 |
agtaagtttctccttaaatttgagaagttacaataggaaaattccagatatgagtattaaaacaaatgatggaattatcatatcaaagatttgcctaaaa |
215 |
Q |
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| T |
41351270 |
ggtaagtttctccttaaatttgagaagttacaataggaaaatgccagatatgagtattaaaacaaatgatggaattatcatatcaaagatttgcctaaaa |
41351171 |
T |
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| Q |
216 |
tacttagaagtttaataacttcaacacattaacataaataatccatatacaaaccaataagccacataaatgaagatgaaatatggttagatatgttaac |
315 |
Q |
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| T |
41351170 |
tacttagaagtttaataacttcaacacattaacataaataatccatatacaaaccaataagccacataaatgaagatgaaaaatggttagatatgttaac |
41351071 |
T |
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| Q |
316 |
aaatccaaaaccaaaccatacccagatgaatcacgctgaatacgatct |
363 |
Q |
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| T |
41351070 |
aaatccaaaaccaaaccatacccagatgaatcacgctgaatacgatct |
41351023 |
T |
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