View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21099_low_8 (Length: 258)
Name: NF21099_low_8
Description: NF21099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21099_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 19 - 256
Target Start/End: Complemental strand, 7564037 - 7563800
Alignment:
| Q |
19 |
aaggggagcaagaatctcacaatcctcatgaagataagcaagccctttagcagaaccaattgcgatcctcattctcgtcggccaatccatggtaggacga |
118 |
Q |
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| T |
7564037 |
aaggggagcaagaatctcacaatcctcatgaagataagcaagccctttagcagaaccaattgcgatcctcattctcgtcggccaatccatggtaggacga |
7563938 |
T |
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| Q |
119 |
ccctttccgtggagatgatactccaatgtgttattggaaataaattcatagaccaacattctttggccaccagaaatacaatatccaacaagtgaaacaa |
218 |
Q |
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| T |
7563937 |
ccctttccgtggagatgatactccaatgtgttattggaaataaattcatagaccaacattctttggccaccagaaatacaatatccaacaagtgaaacaa |
7563838 |
T |
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| Q |
219 |
gatggcgatgatgaacacgactgatgatgtccatctca |
256 |
Q |
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| T |
7563837 |
gatgacgatgatgaacacgactaatgatgtcaatctca |
7563800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 134 - 256
Target Start/End: Original strand, 33145653 - 33145775
Alignment:
| Q |
134 |
tgatactccaatgtgttattggaaataaattcatagaccaacattctttggccaccagaaatacaatatccaacaagtgaaacaagatggcgatgatgaa |
233 |
Q |
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| T |
33145653 |
tgatattccaaagttttatttggaacaaattcataaaccaacattctctgtccaccagaaacacaatatccaacaagcgacacaagatgacgatgatgaa |
33145752 |
T |
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| Q |
234 |
cacgactgatgatgtccatctca |
256 |
Q |
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| T |
33145753 |
cacgactaatgatatcaatctca |
33145775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 114
Target Start/End: Original strand, 33145448 - 33145531
Alignment:
| Q |
31 |
aatctcacaatcctcatgaagataagcaagccctttagcagaaccaattgcgatcctcattctcgtcggccaatccatggtagg |
114 |
Q |
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| T |
33145448 |
aatcttacaatcttcatgaaggtaagcaagtcctctagcagatcctaatgcaattctcattctagtaggccaatccatggtagg |
33145531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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