View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2109_high_1 (Length: 647)
Name: NF2109_high_1
Description: NF2109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2109_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 551; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 8 - 631
Target Start/End: Original strand, 51551719 - 51552342
Alignment:
| Q |
8 |
gagcacagatgaggaaaaggatcatcattggagttatttcttccgttgtcttcgtcggtctcataggttgtgcattctttgttgctaccacaaaatacaa |
107 |
Q |
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| T |
51551719 |
gagcacaaatgaggaaaaggatcatcattggagttatttcttccgttgtcttcgtcggtctcataggttgtgcattctttgttgctaccacaaaatacaa |
51551818 |
T |
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| Q |
108 |
tcctttnnnnnnnnnnnnnnnnnnnaatcatccagaagacacttcaaccgctaatggtagcaaacatgttgcacattcagaaaaggtagtgaaattggta |
207 |
Q |
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|||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51551819 |
tccttttggtggtggtggtggtggtagtcatccagaagacagttcaaccgctaatggtagcaaacatgttgcacattcagaaaaggtagtgaaattggta |
51551918 |
T |
|
| Q |
208 |
tgcagttctgcagattacaaagaaaaatgtgaaggacctcttaacaaagcagtggaaaaggatcctaaacttcaacaccctaaagaccttctcaaagttt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51551919 |
tgcagttctgcagattacaaagaaaaatgtgaaggacctcttaacaaagcagtggaaaaggatcctaaacttcaacaccctaaagaccttctcaaagttt |
51552018 |
T |
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| Q |
308 |
atcttaaaactgtagaggatgaggttaacaaagccttcaacaaaacaaattcattcaaatttaacactaaagaagagaaagctgcatttgaggattgtaa |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51552019 |
atcttaaaactgtagaggatgaggttaacaaagccttcaacaaaacaaattcattcaaatttaacactaaagaagagaaagctgcatttgaggattgtaa |
51552118 |
T |
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| Q |
408 |
agagatgattcaatacgctaaggatgatttagctacctctattgatcaacttagtgaagctgacatgaaaaaactttcttcaaaaacacctgacttgaac |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
51552119 |
agagatgattcaatacgctaaggatgatttagctacctctattgatcaacttagtgaagctgacatgaaaaaacttgcttcaaaaacacctgacttgaac |
51552218 |
T |
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| Q |
508 |
agttggttaagtgctgttatcactttccaagaaacttgcgttgatggttttcctgatggaaaattgaagactgatcttcagaaattgtttcagggttcta |
607 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51552219 |
agttggttaagtgctgttatcactttccaagaaacttgcgttgatggttttcctgatggaaaattgaagactgatcttcagaaattgtttcagggttcta |
51552318 |
T |
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| Q |
608 |
gggaatttgttagcaattctcttg |
631 |
Q |
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| T |
51552319 |
gggaatttgttagcaattctcttg |
51552342 |
T |
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