View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2109_high_4 (Length: 616)
Name: NF2109_high_4
Description: NF2109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2109_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 571; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 15 - 601
Target Start/End: Original strand, 48222496 - 48223082
Alignment:
| Q |
15 |
aaaaacttcaccaccaccaacttcaatgtcaaaatctacaccatccaacacaacatcacctaatggtcttgattttgatgtccctcctaagaaattgttc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48222496 |
aaaaacttcaccaccaccaacttcaatgtcaaaatctacaccatccaacacaacatcacctaatggtcttgattttgatgtccctcctaagaaattgttc |
48222595 |
T |
|
| Q |
115 |
aatatgtaatctccaacgtttctagcatcttcattggatgataaagagtaaccattgacaccaccaccaattgaaagtatgattttgatgcctttctttt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48222596 |
aatatgtaatctccaacgtttctagcatcttcattggatgataaagagtaaccattgacaccaccaccaattgaaagtatgattttgatgcctttctttt |
48222695 |
T |
|
| Q |
215 |
ggcaattttttatgtctatgctcaaactcttgcaaccattgtttgatttggggtcacagtgacctgctagattgagttgaggtttacgaccactaccaaa |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48222696 |
ggcaattttttatgtctatgctcaaactcttgcaaccattgtttgatgtgggatcacagtgacctgctagattgagttgaggtttacgaccactaccaaa |
48222795 |
T |
|
| Q |
315 |
tattgatagaaatgctatattcacaatttcgtatagtccagtgttacatgtttcggtcaatgaaccttctctctcgttttgaccccaataaaccacaatg |
414 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48222796 |
tattgatagaaatgctatgttcacaatttcgtatagtccagtgttacatgtttcggtcaatgaaccttctctctcgttttgaccccaataaaccacaatg |
48222895 |
T |
|
| Q |
415 |
tctccaccaattgtactagaaaccaaagtaagaaaaattaagagaaagataattgaatttgaaagcctacgtgtttcatttcccattgcaatactattat |
514 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48222896 |
tctccaccatttgtactagaaaccaaagtaagaaaaattaagagaaagataattgaatttgaaagcctacgtgtttcatttcccattgcaatactattat |
48222995 |
T |
|
| Q |
515 |
cagcttgatgcttatcctaaggaaccatttataatagaggccacgggataatgttgttaagcaatcaattcatataaattgataatt |
601 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48222996 |
cagcttgatgcttatcctaaggaaccatttataatagaggccacgggataatgttgttaagcaatcaattcatataaattgataatt |
48223082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 17570980 - 17571073
Alignment:
| Q |
21 |
ttcaccaccaccaacttcaatgtcaaaatctacaccatccaacacaacatcacctaatggtcttgattttgatgtccctcctaagaaattgttc |
114 |
Q |
| |
|
||||||| ||||| ||||||| |||||||| | |||||||| ||| ||||||||||||||||||| |||||| || || |||||||||||| |
|
|
| T |
17570980 |
ttcaccatcaccagcttcaatatcaaaatcaattccatccaaaacagcatcacctaatggtcttgaagatgatgtgccacccaagaaattgttc |
17571073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 114
Target Start/End: Complemental strand, 44817321 - 44817231
Alignment:
| Q |
24 |
accaccaccaacttcaatgtcaaaatctacaccatccaacacaacatcacctaatggtcttgattttgatgtccctcctaagaaattgttc |
114 |
Q |
| |
|
|||| ||||| ||||||| |||||||| | |||||||| ||| ||||||||||||||||||| |||||| || || |||||||||||| |
|
|
| T |
44817321 |
accatcaccagcttcaatatcaaaatcaattccatccaaaacagcatcacctaatggtcttgaagatgatgtgccacccaagaaattgttc |
44817231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 44849235 - 44849179
Alignment:
| Q |
30 |
accaacttcaatgtcaaaatctacaccatccaacacaacatcacctaatggtcttga |
86 |
Q |
| |
|
||||| ||||||||||||||||| ||||| |||||| ||||||| ||||||||||| |
|
|
| T |
44849235 |
accaatttcaatgtcaaaatctatgccatctaacacagcatcaccaaatggtcttga |
44849179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 44838148 - 44838092
Alignment:
| Q |
30 |
accaacttcaatgtcaaaatctacaccatccaacacaacatcacctaatggtcttga |
86 |
Q |
| |
|
||||| |||||| |||||||||| ||||| || ||| ||||||||||||||||||| |
|
|
| T |
44838148 |
accaagttcaatatcaaaatctattccatctaaaacagcatcacctaatggtcttga |
44838092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University