View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2109_low_12 (Length: 253)
Name: NF2109_low_12
Description: NF2109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2109_low_12 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 13 - 253
Target Start/End: Original strand, 2925831 - 2926072
Alignment:
| Q |
13 |
aatattaatttattttcatgtatgtctaaattcattgaaattttatgtacatattcattaacataatttagtgactggnnnnnnnnn-ttactatatact |
111 |
Q |
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| T |
2925831 |
aatattaatttattttcatgtatgtctaaattcattgaa-ttttatgtacatattcattaacataatttagtgactgggaaaaaaaaattactatatact |
2925929 |
T |
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| Q |
112 |
atagcaatgtaatataaaatggagtagtttttattgtttatagaatttatttatacaccttgacc--nnnnnnnnnnnnnngaatttatttatacactgt |
209 |
Q |
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| T |
2925930 |
atagcaatgtaatataaaatggagtagtttttattgtttatagaatttatttatacaccttgaccaaaaaaaaaaaaaaaagaatttatttatacactgt |
2926029 |
T |
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| Q |
210 |
acatgtaaaatatttgtatacatgcatctcctgtgtatgtgaac |
253 |
Q |
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| T |
2926030 |
acatgtaaaatatttgtatacatgcatct-gtgtgtatgtgaac |
2926072 |
T |
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