View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2109_low_3 (Length: 643)
Name: NF2109_low_3
Description: NF2109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2109_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 569; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 19 - 639
Target Start/End: Original strand, 40179502 - 40180113
Alignment:
| Q |
19 |
gtgccggcgttagagcaatgtaataaagaggatgaaaatgaagaggatgaggatgaggctattgttgatagtgacaaaatggaatggagcactgaggagg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40179502 |
gtgccggcgttagagcaatgtaataaagaggatgaaaatgaagaggatgaggatgaggctattgttgatagtgacaaaatggaatggagcactgaggagg |
40179601 |
T |
|
| Q |
119 |
aaaacaatgagacaaacatgaatggaaatatggttaacagtgcattcaaagcaccaaatgctaagaaatccaacattgtaggggggctcaaagtgacacc |
218 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40179602 |
aaaacaatgagacaaacat---------tatggttaacagtccattcaaagcaccaaatgctaagaaatccaacattgtaggggggctcaaagtgacacc |
40179692 |
T |
|
| Q |
219 |
tcctccaccaatcacactgcctggttctgcaggtaacattttttcatttcatcttaatgttcattttcagtttcgtaattatatttcaatcaatttgatt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
40179693 |
tcctccaccaatcacactgcctggttctgcaggtaacattttttcatttcatcttaatgttcattttcagtttcgtaattatatttcagtcaatttgatt |
40179792 |
T |
|
| Q |
319 |
gtactattgctcaaaaatgatcattgtcttgttacaagtatgtctttttatttcactctaaatacaaatcattaaaatccaaaaaagaagagctgaagac |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40179793 |
gtactattgctcaaaaatgatcattgtcttgttacaagtatgtctttttatttcactctaaatacaaatcattaaaatccaaaaaagaagagctgaagac |
40179892 |
T |
|
| Q |
419 |
attagtttgagtagttttatgtgcattcatatcaaatcaatatggttgtgattccttaaggacatatagattatcgtttacttttttcttattgatcaat |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40179893 |
attagtttgagtagttttatgtgcattcatatcaaatcaatatggttgtgattccttaaggacatatagattatcgtttacttttttcttattgatcaat |
40179992 |
T |
|
| Q |
519 |
tattttcttgttgctttgcactgataagcagagagaccgccacacccatttttccaagggaactacgatccaggtaaatgaaatcaactcagttttgcaa |
618 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
40179993 |
tattttcttgttgctttgcactgataagcagagagaccgccacacccatttttccaagggaactatgatccaggtaaatgaaatcaactcagttttgcaa |
40180092 |
T |
|
| Q |
619 |
cttttctaattcatctcactc |
639 |
Q |
| |
|
|||||||||||| | |||||| |
|
|
| T |
40180093 |
cttttctaattcttgtcactc |
40180113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University