View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2109_low_4 (Length: 626)
Name: NF2109_low_4
Description: NF2109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2109_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 548; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 11 - 611
Target Start/End: Complemental strand, 32742028 - 32741428
Alignment:
| Q |
11 |
acatcatcatccccctaagctaaataattatataccctaaaggcagtgccaagaaatttggcaaattcgaccatctacttccttttccggacaaaacata |
110 |
Q |
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| T |
32742028 |
acatcatcatccccctaagctaaataattatataccctaaaggcagtgccaagaaatttggcaaattcgaccatctacttctttttccggacaaaacata |
32741929 |
T |
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| Q |
111 |
gactcaatcaaagaagagcaaagtagtaaactttgtcctttgattttaatcaatatttatttataactataattgatctatatccttttcaaaagttata |
210 |
Q |
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| T |
32741928 |
gactcaatcaaagaagagcaaagtagtaaactttatcctttgattttaatcaatatttatttataactataattgatctatatccttttcaaaagttata |
32741829 |
T |
|
| Q |
211 |
ttcaattaggctacgtggttagaaggaagtgcgagaaagaaaattaaaaaaccatgcattcaagtcaaaaactttccatagcaggaatcatatatcatgt |
310 |
Q |
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| T |
32741828 |
ttcaattaggctacgtggttagaaggaagtgcgagaaagaaaattaaaaaaccatgcattcaagtcaaagactctccatagcaggaatcatatatcatgt |
32741729 |
T |
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| Q |
311 |
gaccaattcaaaacaaatttgatgtttttgtttttcttctttcacatgtagtaatataatatgacagttaattaattaataaatgatcactagtcaacat |
410 |
Q |
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| T |
32741728 |
aaccaattcaaaacaaatttgatgtttttgtttttcttctttcacatgtagtaatataatatgacagttaattaattaataaatgatcactagtcaacat |
32741629 |
T |
|
| Q |
411 |
taaatcgttaaataaaataacccatgagtcacacaatttannnnnnnactcaagaatattaggcaaaccaattaatataaatagcacgatccccccatga |
510 |
Q |
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| T |
32741628 |
taaatcgttaaataaaataacacatgagtcacacaatttattcttttactcaagaatgttaggcaaaccaattaatataaatagcacgacccccccatga |
32741529 |
T |
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| Q |
511 |
gatgcttaaatattatagtagtgcaatattcatcttgcttactaaatctccaattcattttcaaagacacacaacaccatgaaggttctcaacgttattt |
610 |
Q |
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| T |
32741528 |
gatgcttaaatattatagtagtgcaatattcatcttgcttactaaatctccaattcattttcaaagacacacaacaccatgaaggttctcaacgttattt |
32741429 |
T |
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| Q |
611 |
t |
611 |
Q |
| |
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| T |
32741428 |
t |
32741428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 20 - 611
Target Start/End: Complemental strand, 32738925 - 32738364
Alignment:
| Q |
20 |
tccccctaagctaaataattatataccctaaaggcagtgccaagaaatttggcaaattcgaccatctacttccttttccggacaaaacatagactcaatc |
119 |
Q |
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| T |
32738925 |
tccccctcggctaaataattatacacactaaaggcagtaccaagaaatttagcaaattcgaccatctgcttc-ttttccagtcaaaacatagactcaatc |
32738827 |
T |
|
| Q |
120 |
aaagaagagcaaagtagtaaactttgtcc-tttgattttaatcaat-atttatttataactataattgatctatatccttttcaaaagttatattcaatt |
217 |
Q |
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| T |
32738826 |
aaagaagagcaaagtagtaaactttgtccttttgattttaattaataatttattta----tataattgatctatatccttttcaaaagatctattcaatt |
32738731 |
T |
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| Q |
218 |
aggctacgtggttagaaggaagtgcgagaaagaaaattaaaaaaccatgcattcaagtcaaaaactttccatagcaggaatca-----tatatcatgtga |
312 |
Q |
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| T |
32738730 |
aggctacgtgattagaaggaaatgagaaaaagaga-----------atgcattcaagtcaaaaactctccatagcaaatagcatgaattatatcatgtga |
32738642 |
T |
|
| Q |
313 |
ccaattcaaaacaaatttgatgtttttgtttttcttctttcacatg---tagtaatataatatgacagttaattaattaataaatgatcactagtcaaca |
409 |
Q |
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| T |
32738641 |
ccaattcaaaacaaatttgatctttttgttttgcttctttcaaatgtaatagtaatataagataaccgttagttaattaataaatgatcactagtcaaca |
32738542 |
T |
|
| Q |
410 |
ttaaatcgttaaat-aaaataacccatgagtcacacaatttannnnnnnactcaagaatattaggcaaaccaattaatataaatagcacgatccccccat |
508 |
Q |
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|||||||||||||| |||||||| ||||||| ||||| |||||||||| ||||| | |||||||||||||||||||||||||||||||| |
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| T |
32738541 |
ttaaatcgttaaataaaaataactcatgagt----taattt-----tttactcaagaatgttaggtacaccaattaatataaatagcacgatccccccat |
32738451 |
T |
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| Q |
509 |
gagatgcttaaatattatagtagtgcaatattcatcttgcttactaaatctccaattcattttcaaagacacacaacaccatgaaggttctcaacgttat |
608 |
Q |
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| T |
32738450 |
gagatgctcaaatatt-------tg---------tcttgcttattaaatctccaattctttttcaaagacacacaacaccatgaaggttctcaaagttat |
32738367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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