View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2109_low_6 (Length: 486)

Name: NF2109_low_6
Description: NF2109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2109_low_6
NF2109_low_6
[»] chr7 (14 HSPs)
chr7 (18-474)||(25492400-25492874)
chr7 (18-301)||(25500970-25501252)
chr7 (182-298)||(25642393-25642509)
chr7 (364-460)||(25474062-25474158)
chr7 (364-460)||(25642204-25642300)
chr7 (349-417)||(25500834-25500902)
chr7 (368-457)||(25449753-25449842)
chr7 (364-472)||(25431393-25431501)
chr7 (182-298)||(25431184-25431300)
chr7 (182-274)||(25449963-25450055)
chr7 (182-288)||(25473844-25473950)
chr7 (203-288)||(25429197-25429282)
chr7 (69-120)||(25450102-25450155)
chr7 (91-121)||(25429355-25429385)
[»] chr5 (2 HSPs)
chr5 (182-303)||(495153-495274)
chr5 (399-472)||(495394-495467)
[»] chr2 (5 HSPs)
chr2 (369-457)||(35101344-35101432)
chr2 (399-460)||(35173936-35173997)
chr2 (399-442)||(35050634-35050677)
chr2 (364-421)||(35152807-35152864)
chr2 (369-457)||(35093039-35093127)


Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 18 - 474
Target Start/End: Complemental strand, 25492874 - 25492400
Alignment:
Q  18 gatacatcgttaattaaccatgttgttggtcagtaattaacgatggtattggtaaataattttcaattaatattgtcatatcatgtttaagaagataatt 117  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  25492874 gatacatcgttaattaaccatgttgttagtcagtaattaacgatggtattagtaaataattttcaattaatattgtcatatcatgtttaagaagataatt 25492775  T
Q  118 acctctcagggattggagaattatatattgnnnnnnnnnnncttcatcatggactttaaggaataaggccaagattaaagagatcagtttctttcccctt 217  Q
    ||||||||||||| ||||||||||||  ||           ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  25492774 acctctcagggataggagaattatattgtgtttttttatttcttcatcatggactttaagtaataaggccaagattaaagagatcagtttctttcccctt 25492675  T
Q  218 ggcttgtttcatctcgacttcatcttcatcagaaacatgccaattgtaaggaagttggattttaggctcaatgctactgcttctttcannnnnnnncaca 317  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||         ||||    
T  25492674 ggcttgtttcatctcgacttcatcttcatcacaaacataccaattgtaaggaagttggattttaggctcaatgctactgcttctttctttttgtttcaca 25492575  T
Q  318 atctgtaaaggaagag-------atctct-----ttgaga------aagtcttggttactgcgtgcaacccccatttcttgataatcaaaccttgtcggg 399  Q
    ||||||||||||||||       ||||||     |||| |      |  | |||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  25492574 atctgtaaaggaagagatatcttatctctcggtattgatagctttaatttattggctactgcgtgcaacccccatttcttgataatcaaaccttgccggg 25492475  T
Q  400 ctttaaatgtgatatgtgctcctgtttttacaaaatgacagtgttttcgagagatatagataacccaaatatatt 474  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  25492474 ctttaaatgtgatatgtgctcctgtttttacaaaatggcagtgttttcgagagatatagataacccaaagatatt 25492400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 18 - 301
Target Start/End: Complemental strand, 25501252 - 25500970
Alignment:
Q  18 gatacatcgttaattaaccatgttgttggtcagtaattaacgatggtattggtaaataattttcaattaatattgtcatatcatgtttaagaagataatt 117  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  25501252 gatacatcgttaattaaccatgttgttagtcagtaattaacgatggtattggtaaataattttcatataatattgtcatatcatgtttaagaagataatt 25501153  T
Q  118 acctctcagggattggagaattatatattgnnnnnnnnnnncttcatc-atggactttaaggaataaggccaagattaaagagatcagtttctttcccct 216  Q
    |||||  |||| | ||||||||||||  ||           | | ||  |||||||||||| || |||||||||||||||||||| |||| |||||||||    
T  25501152 acctc--agggctaggagaattatattgtgttttttttcttcattatggatggactttaagtaaaaaggccaagattaaagagattagttactttcccct 25501055  T
Q  217 tggcttgtttcatctcgacttcatcttcatcagaaacatgccaattgtaaggaagttggattttaggctcaatgctactgcttct 301  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  25501054 tggcttgtttcatctcgacttcatcttcatcagaaacataccaattgtaaggaagttggattttaggctcaatgctactgcttct 25500970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 182 - 298
Target Start/End: Complemental strand, 25642509 - 25642393
Alignment:
Q  182 aaggccaagattaaagagatcagtttctttccccttggcttgtttcatctcgacttcatcttcatcagaaacatgccaattgtaaggaagttggatttta 281  Q
    ||||||||||||||||||||||||||||||||||||||||   | | ||||| ||||||||||||||||||||  |||||||||||| ||||||||||||    
T  25642509 aaggccaagattaaagagatcagtttctttccccttggctccatccttctcggcttcatcttcatcagaaacaaaccaattgtaagggagttggatttta 25642410  T
Q  282 ggctcaatgctactgct 298  Q
    ||||||| |||||||||    
T  25642409 ggctcaaagctactgct 25642393  T

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Target: chr7; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 364 - 460
Target Start/End: Original strand, 25474062 - 25474158
Alignment:
Q  364 gcaacccccatttcttgataatcaaaccttgtcgggctttaaatgtgatatgtgctcctgtttttacaaaatgacagtgttttcgagagatatagat 460  Q
    |||||||||||| ||| |||||||||||||| ||||||||||||||||| ||| ||||||||| |||||||||||||||||  ||||||||| ||||    
T  25474062 gcaacccccattccttaataatcaaaccttggcgggctttaaatgtgatttgtactcctgtttctacaaaatgacagtgttcccgagagataaagat 25474158  T

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Target: chr7; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 364 - 460
Target Start/End: Complemental strand, 25642300 - 25642204
Alignment:
Q  364 gcaacccccatttcttgataatcaaaccttgtcgggctttaaatgtgatatgtgctcctgtttttacaaaatgacagtgttttcgagagatatagat 460  Q
    |||| ||||||| |||||||||||||||||| || |||||||||||||| |||||||||||||| |||||||| |||||||  ||||||||||||||    
T  25642300 gcaatccccattccttgataatcaaaccttggcgagctttaaatgtgatttgtgctcctgttttcacaaaatggcagtgttcccgagagatatagat 25642204  T

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Target: chr7; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 349 - 417
Target Start/End: Complemental strand, 25500902 - 25500834
Alignment:
Q  349 tcttggttactgcgtgcaacccccatttcttgataatcaaaccttgtcgggctttaaatgtgatatgtg 417  Q
    |||||| ||| || ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  25500902 tcttggctacggcatgcaacccccattccttgataatcaaaccttgccgggctttaaatgtgatatgtg 25500834  T

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Target: chr7; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 368 - 457
Target Start/End: Complemental strand, 25449842 - 25449753
Alignment:
Q  368 cccccatttcttgataatcaaaccttgtcgggctttaaatgtgatatgtgctcctgtttttacaaaatgacagtgttttcgagagatata 457  Q
    |||||||| |||||||||||||||||    ||||||||||||||||| ||| | |||||||||||| ||||||||||  |||||||||||    
T  25449842 cccccattccttgataatcaaaccttcagaggctttaaatgtgatatctgcccgtgtttttacaaagtgacagtgttcccgagagatata 25449753  T

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Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 364 - 472
Target Start/End: Original strand, 25431393 - 25431501
Alignment:
Q  364 gcaacccccatttcttgataatcaaaccttgtcgggctttaaatgtgatatgtgctcctgtttttacaaaatgacagtgttttcgagagatatagataac 463  Q
    |||||||||||| ||| |||||||||||||  |  |||||||||||||| |||||||| |||| ||| ||||| |||||||  ||||||||| |||| |     
T  25431393 gcaacccccattccttaataatcaaaccttcgcatgctttaaatgtgatttgtgctcccgtttctacgaaatggcagtgttcccgagagataaagatcat 25431492  T
Q  464 ccaaatata 472  Q
    |||||||||    
T  25431493 ccaaatata 25431501  T

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Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 182 - 298
Target Start/End: Original strand, 25431184 - 25431300
Alignment:
Q  182 aaggccaagattaaagagatcagtttctttccccttggcttgtttcatctcgacttcatcttcatcagaaacatgccaattgtaaggaagttggatttta 281  Q
    ||||||||||||| ||||| || |||| |||| |||||||   | | ||||| |||||||||  ||||||||   ||||||||||||||||||||||||     
T  25431184 aaggccaagattagagagaccaatttccttccgcttggctgcatccttctcggcttcatctttgtcagaaactaaccaattgtaaggaagttggattttc 25431283  T
Q  282 ggctcaatgctactgct 298  Q
    |||||||  ||||||||    
T  25431284 ggctcaaatctactgct 25431300  T

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Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 182 - 274
Target Start/End: Complemental strand, 25450055 - 25449963
Alignment:
Q  182 aaggccaagattaaagagatcagtttctttccccttggcttgtttcatctcgacttcatcttcatcagaaacatgccaattgtaaggaagttg 274  Q
    ||||||||||||||||||||||||||| |||||||||||||  |   ||||| |||||||||| | ||||||   ||||||||||||| ||||    
T  25450055 aaggccaagattaaagagatcagtttccttccccttggcttcatctttctcggcttcatcttctttagaaactaaccaattgtaaggatgttg 25449963  T

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Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 182 - 288
Target Start/End: Original strand, 25473844 - 25473950
Alignment:
Q  182 aaggccaagattaaagagatcagtttctttccccttggcttgtttca-tctcgacttcatcttcatcagaaacatgccaattgtaaggaagttggatttt 280  Q
    ||||||||||||||||||||| |||||||| ||||||| || | ||| |||||| |  |||||| | ||||||   ||||||||||||||||||||||||    
T  25473844 aaggccaagattaaagagatcggtttcttttcccttgg-ttctatcattctcgattgaatcttcgttagaaactaaccaattgtaaggaagttggatttt 25473942  T
Q  281 aggctcaa 288  Q
    || |||||    
T  25473943 agtctcaa 25473950  T

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Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 203 - 288
Target Start/End: Complemental strand, 25429282 - 25429197
Alignment:
Q  203 agtttctttccccttggcttgtttcatctcgacttcatcttcatcagaaacatgccaattgtaaggaagttggattttaggctcaa 288  Q
    ||||||||| ||||| | ||  ||| ||||||||| |||||||||||||||   ||||||||||||| ||| ||||||||||||||    
T  25429282 agtttctttgcccttagattccttcgtctcgactttatcttcatcagaaactaaccaattgtaaggatgttagattttaggctcaa 25429197  T

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Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 120
Target Start/End: Complemental strand, 25450155 - 25450102
Alignment:
Q  69 gtaaataattttcaattaatattgt--catatcatgtttaagaagataattacc 120  Q
    ||||||| |||||||||||||||||  ||||||||||||||||| |||||||||    
T  25450155 gtaaatagttttcaattaatattgtggcatatcatgtttaagaacataattacc 25450102  T

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Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 91 - 121
Target Start/End: Complemental strand, 25429385 - 25429355
Alignment:
Q  91 tgtcatatcatgtttaagaagataattacct 121  Q
    |||||||||||||||||||||||||||||||    
T  25429385 tgtcatatcatgtttaagaagataattacct 25429355  T

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Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 182 - 303
Target Start/End: Original strand, 495153 - 495274
Alignment:
Q  182 aaggccaagattaaagagatcagtttctttccccttggcttgtttcatctcgacttcatcttcatcagaaacatgccaattgtaaggaagttggatttta 281  Q
    |||||| |||||||||||||   ||||||| |||||||||| ||   |||| ||||||||||||||||||||   ||||||||||||||| | |||||||    
T  495153 aaggcctagattaaagagattgatttcttttcccttggcttcttcattctcaacttcatcttcatcagaaactgaccaattgtaaggaagcttgatttta 495252  T
Q  282 ggctcaatgctactgcttcttt 303  Q
    |||||||  || ||||||||||    
T  495253 ggctcaactcttctgcttcttt 495274  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 399 - 472
Target Start/End: Original strand, 495394 - 495467
Alignment:
Q  399 gctttaaatgtgatatgtgctcctgtttttacaaaatgacagtgttttcgagagatatagataacccaaatata 472  Q
    |||||||| ||||| |||||||||||||| |||||||| |||||||  |||||||||||||| |||||||||||    
T  495394 gctttaaacgtgatctgtgctcctgttttcacaaaatggcagtgttcacgagagatatagattacccaaatata 495467  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 369 - 457
Target Start/End: Original strand, 35101344 - 35101432
Alignment:
Q  369 ccccatttcttgataatcaaaccttgtcgggctttaaatgtgatatgtgctcctgtttttacaaaatgacagtgttttcgagagatata 457  Q
    |||||||| || || | ||||||| | | ||||||||| |||||||||||||||||||| ||||||||||| || | ||||||||||||    
T  35101344 ccccatttttttatcaccaaacctggacaggctttaaaagtgatatgtgctcctgttttcacaaaatgacaatgctctcgagagatata 35101432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 399 - 460
Target Start/End: Original strand, 35173936 - 35173997
Alignment:
Q  399 gctttaaatgtgatatgtgctcctgtttttacaaaatgacagtgttttcgagagatatagat 460  Q
    ||||||||||||||||||||||||||| |||||||||| |||||   || ||||||||||||    
T  35173936 gctttaaatgtgatatgtgctcctgttgttacaaaatggcagtggggtctagagatatagat 35173997  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 399 - 442
Target Start/End: Original strand, 35050634 - 35050677
Alignment:
Q  399 gctttaaatgtgatatgtgctcctgtttttacaaaatgacagtg 442  Q
    |||||||||||||| |||||||||||| |||||||||| |||||    
T  35050634 gctttaaatgtgatttgtgctcctgttgttacaaaatggcagtg 35050677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 421
Target Start/End: Complemental strand, 35152864 - 35152807
Alignment:
Q  364 gcaacccccatttcttgataatcaaaccttgtcgggctttaaatgtgatatgtgctcc 421  Q
    |||| ||||||||||| || |||||||||   | ||||||||||||||||||||||||    
T  35152864 gcaatccccatttcttcatgatcaaacctgtgcaggctttaaatgtgatatgtgctcc 35152807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 457
Target Start/End: Original strand, 35093039 - 35093127
Alignment:
Q  369 ccccatttcttgataatcaaaccttgtcgggctttaaatgtgatatgtgctcctgtttttacaaaatgacagtgttttcgagagatata 457  Q
    ||||||||||  || | ||||||| | | |||||||||||||||||||| ||||||||  ||||| || || || | ||||||||||||    
T  35093039 ccccatttctctatcaccaaacctgggcaggctttaaatgtgatatgtgatcctgtttcaacaaagtggcaatggtctcgagagatata 35093127  T

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