View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21100_high_10 (Length: 463)

Name: NF21100_high_10
Description: NF21100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21100_high_10
NF21100_high_10
[»] chr6 (21 HSPs)
chr6 (11-279)||(32333874-32334150)
chr6 (357-435)||(26595399-26595477)
chr6 (357-417)||(17551339-17551399)
chr6 (309-435)||(30945822-30945942)
chr6 (311-349)||(12501475-12501513)
chr6 (357-435)||(13423019-13423097)
chr6 (361-435)||(32316871-32316945)
chr6 (357-435)||(34047437-34047515)
chr6 (309-435)||(25127773-25127905)
chr6 (309-346)||(33656697-33656734)
chr6 (309-434)||(2241969-2242094)
chr6 (355-435)||(10335599-10335679)
chr6 (309-348)||(11785354-11785393)
chr6 (309-348)||(27334857-27334896)
chr6 (309-348)||(27395597-27395636)
chr6 (361-415)||(5080530-5080584)
chr6 (313-347)||(31413539-31413573)
chr6 (310-347)||(6256435-6256472)
chr6 (357-418)||(22079523-22079584)
chr6 (308-348)||(3401082-3401122)
chr6 (306-342)||(30714676-30714712)
[»] chr1 (43 HSPs)
chr1 (309-416)||(50775118-50775229)
chr1 (308-418)||(9566920-9567034)
chr1 (357-435)||(31433541-31433618)
chr1 (357-433)||(14983823-14983899)
chr1 (309-348)||(26547233-26547272)
chr1 (310-385)||(16836108-16836175)
chr1 (308-377)||(26101392-26101464)
chr1 (371-435)||(33173570-33173635)
chr1 (300-348)||(7371981-7372029)
chr1 (363-435)||(31317373-31317445)
chr1 (308-348)||(39669804-39669844)
chr1 (308-421)||(49647107-49647223)
chr1 (357-411)||(3558897-3558949)
chr1 (309-348)||(18610772-18610811)
chr1 (357-435)||(18639650-18639726)
chr1 (310-349)||(45350127-45350166)
chr1 (309-348)||(46910403-46910442)
chr1 (309-435)||(49065307-49065436)
chr1 (357-415)||(649819-649877)
chr1 (306-348)||(1689387-1689429)
chr1 (357-431)||(6949927-6950001)
chr1 (310-348)||(7648250-7648288)
chr1 (357-435)||(8846024-8846102)
chr1 (361-447)||(30745041-30745127)
chr1 (361-447)||(30766492-30766578)
chr1 (310-348)||(32938859-32938897)
chr1 (307-349)||(34941952-34941994)
chr1 (361-435)||(48261194-48261268)
chr1 (309-347)||(48325801-48325839)
chr1 (310-435)||(51436713-51436843)
chr1 (362-435)||(11597692-11597765)
chr1 (310-347)||(14442260-14442297)
chr1 (362-431)||(18512290-18512359)
chr1 (310-347)||(43937728-43937765)
chr1 (309-345)||(4906855-4906891)
chr1 (311-343)||(9882697-9882729)
chr1 (355-435)||(25672390-25672470)
chr1 (309-353)||(30772611-30772655)
chr1 (359-418)||(36954710-36954767)
chr1 (309-349)||(41885720-41885760)
chr1 (359-435)||(43775258-43775334)
chr1 (308-348)||(46902611-46902651)
chr1 (355-435)||(49660228-49660308)
[»] chr5 (33 HSPs)
chr5 (309-402)||(21353492-21353587)
chr5 (307-435)||(13309879-13310011)
chr5 (361-435)||(33958202-33958276)
chr5 (359-435)||(33599015-33599090)
chr5 (357-432)||(4719701-4719776)
chr5 (355-386)||(20270619-20270650)
chr5 (357-435)||(20770182-20770260)
chr5 (158-228)||(27594485-27594555)
chr5 (309-348)||(38500942-38500981)
chr5 (310-348)||(6538870-6538908)
chr5 (309-343)||(14508195-14508229)
chr5 (361-435)||(16690554-16690628)
chr5 (310-348)||(19983841-19983879)
chr5 (357-435)||(22098306-22098384)
chr5 (359-434)||(27546116-27546193)
chr5 (310-348)||(28501592-28501630)
chr5 (357-415)||(36738998-36739056)
chr5 (357-431)||(40829465-40829539)
chr5 (357-418)||(6758750-6758811)
chr5 (307-348)||(8959157-8959198)
chr5 (357-386)||(12401618-12401647)
chr5 (357-418)||(14532555-14532616)
chr5 (349-418)||(29463038-29463107)
chr5 (308-348)||(2050925-2050965)
chr5 (355-435)||(5168231-5168311)
chr5 (309-349)||(5996666-5996706)
chr5 (364-435)||(6596390-6596459)
chr5 (308-348)||(15909228-15909268)
chr5 (308-348)||(27005512-27005552)
chr5 (309-349)||(29803224-29803264)
chr5 (309-349)||(34428159-34428199)
chr5 (308-348)||(41192585-41192625)
chr5 (359-435)||(41321307-41321383)
[»] scaffold0174 (1 HSPs)
scaffold0174 (313-432)||(34739-34862)
[»] chr8 (31 HSPs)
chr8 (84-210)||(11442859-11442985)
chr8 (359-435)||(40517310-40517386)
chr8 (355-418)||(3547119-3547182)
chr8 (310-349)||(37568646-37568685)
chr8 (357-435)||(5740728-5740806)
chr8 (357-435)||(11253485-11253563)
chr8 (357-435)||(12734954-12735032)
chr8 (357-435)||(35067211-35067289)
chr8 (355-415)||(5277462-5277522)
chr8 (309-349)||(6004943-6004983)
chr8 (300-348)||(36064020-36064068)
chr8 (309-349)||(36497660-36497700)
chr8 (310-382)||(43873687-43873762)
chr8 (355-418)||(26000586-26000649)
chr8 (357-435)||(33100413-33100489)
chr8 (304-431)||(38675597-38675728)
chr8 (357-435)||(6440132-6440210)
chr8 (359-437)||(7331290-7331368)
chr8 (357-435)||(7472969-7473046)
chr8 (357-435)||(10839425-10839503)
chr8 (357-435)||(25830188-25830266)
chr8 (309-343)||(40413376-40413410)
chr8 (309-347)||(43419878-43419916)
chr8 (306-347)||(7010681-7010722)
chr8 (357-410)||(12898897-12898950)
chr8 (308-349)||(37562173-37562214)
chr8 (357-418)||(39211092-39211153)
chr8 (308-348)||(8143242-8143282)
chr8 (308-348)||(30927964-30928004)
chr8 (312-348)||(43186298-43186334)
chr8 (359-435)||(45407129-45407205)
[»] chr4 (51 HSPs)
chr4 (355-435)||(52895276-52895357)
chr4 (309-348)||(940292-940331)
chr4 (357-435)||(23667929-23668007)
chr4 (357-435)||(37997304-37997382)
chr4 (306-375)||(40847366-40847438)
chr4 (357-434)||(149428-149505)
chr4 (308-349)||(4914904-4914945)
chr4 (307-348)||(35017150-35017191)
chr4 (308-349)||(47014937-47014978)
chr4 (355-435)||(1795924-1796004)
chr4 (357-432)||(40693570-40693643)
chr4 (306-382)||(43864030-43864108)
chr4 (306-375)||(10994155-10994227)
chr4 (357-435)||(28458319-28458397)
chr4 (309-348)||(38864769-38864808)
chr4 (361-435)||(41849745-41849820)
chr4 (309-348)||(43168747-43168786)
chr4 (309-348)||(53662461-53662500)
chr4 (361-435)||(53801702-53801774)
chr4 (310-348)||(9776365-9776403)
chr4 (308-384)||(12638823-12638902)
chr4 (309-347)||(18568469-18568507)
chr4 (357-447)||(23369263-23369353)
chr4 (357-418)||(24045295-24045354)
chr4 (373-435)||(28417594-28417656)
chr4 (357-435)||(31468931-31469009)
chr4 (357-431)||(31559589-31559663)
chr4 (309-343)||(33093142-33093176)
chr4 (303-349)||(33278668-33278714)
chr4 (309-382)||(35661593-35661669)
chr4 (357-415)||(37297099-37297157)
chr4 (357-415)||(40348844-40348902)
chr4 (309-343)||(41262656-41262690)
chr4 (44-102)||(44608208-44608266)
chr4 (310-348)||(45176768-45176806)
chr4 (361-435)||(50721687-50721761)
chr4 (307-375)||(51359800-51359864)
chr4 (310-343)||(2397327-2397360)
chr4 (357-418)||(5249919-5249980)
chr4 (310-343)||(19174801-19174834)
chr4 (307-348)||(41495010-41495051)
chr4 (308-348)||(12074184-12074224)
chr4 (308-348)||(13267511-13267551)
chr4 (355-435)||(24509330-24509410)
chr4 (355-435)||(26732273-26732353)
chr4 (307-343)||(34259812-34259848)
chr4 (355-411)||(38510738-38510794)
chr4 (355-431)||(42853625-42853701)
chr4 (309-349)||(42853938-42853978)
chr4 (309-349)||(44272842-44272882)
chr4 (355-435)||(53796704-53796784)
[»] chr7 (40 HSPs)
chr7 (359-435)||(41189486-41189562)
chr7 (357-435)||(22925227-22925303)
chr7 (357-408)||(39029909-39029960)
chr7 (308-435)||(41018661-41018792)
chr7 (357-415)||(24532905-24532963)
chr7 (308-349)||(9031203-9031244)
chr7 (359-431)||(3683584-3683656)
chr7 (309-418)||(3937083-3937182)
chr7 (355-435)||(35600720-35600800)
chr7 (359-431)||(35627967-35628039)
chr7 (310-435)||(36352527-36352658)
chr7 (357-421)||(44189267-44189331)
chr7 (355-435)||(45815198-45815278)
chr7 (313-348)||(7458224-7458259)
chr7 (309-348)||(15564910-15564949)
chr7 (306-375)||(19426576-19426648)
chr7 (307-346)||(29355359-29355398)
chr7 (309-348)||(43255600-43255639)
chr7 (310-349)||(49167887-49167926)
chr7 (357-435)||(4292478-4292556)
chr7 (306-348)||(6110011-6110053)
chr7 (349-435)||(28030919-28031004)
chr7 (361-435)||(31445372-31445446)
chr7 (357-435)||(40854597-40854675)
chr7 (357-435)||(41430094-41430172)
chr7 (308-349)||(34304710-34304751)
chr7 (310-343)||(37832450-37832483)
chr7 (355-416)||(38340344-38340405)
chr7 (308-349)||(40693560-40693601)
chr7 (310-382)||(41077498-41077571)
chr7 (357-434)||(47448877-47448954)
chr7 (309-349)||(4971289-4971329)
chr7 (49-97)||(23041506-23041554)
chr7 (299-343)||(23680065-23680109)
chr7 (311-343)||(24044774-24044806)
chr7 (309-349)||(25940664-25940704)
chr7 (355-435)||(33776408-33776488)
chr7 (355-407)||(36703842-36703894)
chr7 (311-347)||(38218374-38218410)
chr7 (309-349)||(40077253-40077293)
[»] chr3 (43 HSPs)
chr3 (309-435)||(52564592-52564706)
chr3 (355-418)||(28700509-28700572)
chr3 (310-418)||(6178385-6178496)
chr3 (357-435)||(44813390-44813468)
chr3 (310-348)||(45205288-45205326)
chr3 (361-435)||(52485527-52485601)
chr3 (355-432)||(6093824-6093901)
chr3 (359-435)||(32587740-32587814)
chr3 (301-435)||(37035468-37035594)
chr3 (357-418)||(42358598-42358659)
chr3 (357-418)||(50314675-50314736)
chr3 (309-349)||(7867743-7867783)
chr3 (309-349)||(35376583-35376623)
chr3 (399-435)||(46965861-46965897)
chr3 (399-435)||(46965952-46965988)
chr3 (158-228)||(40056616-40056686)
chr3 (357-435)||(44413865-44413941)
chr3 (310-349)||(51873393-51873432)
chr3 (309-348)||(53932424-53932463)
chr3 (357-431)||(54007514-54007586)
chr3 (357-415)||(288776-288834)
chr3 (303-349)||(12792631-12792677)
chr3 (310-348)||(37134639-37134677)
chr3 (357-415)||(38926678-38926736)
chr3 (306-348)||(38944174-38944216)
chr3 (357-431)||(39629785-39629859)
chr3 (357-415)||(41505541-41505599)
chr3 (357-427)||(49761358-49761427)
chr3 (361-431)||(51982153-51982223)
chr3 (357-435)||(52963258-52963336)
chr3 (357-435)||(55361176-55361254)
chr3 (299-348)||(5398907-5398956)
chr3 (357-434)||(34456841-34456918)
chr3 (308-349)||(34607952-34607993)
chr3 (308-349)||(41717261-41717302)
chr3 (67-143)||(2517416-2517492)
chr3 (359-435)||(12762632-12762708)
chr3 (309-349)||(20215947-20215987)
chr3 (308-348)||(29705901-29705941)
chr3 (309-349)||(29800581-29800621)
chr3 (308-348)||(30633849-30633889)
chr3 (309-349)||(45528974-45529014)
chr3 (307-347)||(50146485-50146525)
[»] chr2 (30 HSPs)
chr2 (301-349)||(10288141-10288189)
chr2 (361-435)||(1352443-1352517)
chr2 (357-435)||(4138129-4138206)
chr2 (357-435)||(42430700-42430778)
chr2 (309-347)||(42607553-42607591)
chr2 (357-418)||(2144770-2144831)
chr2 (355-408)||(39213740-39213792)
chr2 (308-348)||(36383460-36383500)
chr2 (306-349)||(10687937-10687980)
chr2 (309-348)||(18531600-18531639)
chr2 (306-348)||(38290701-38290744)
chr2 (305-347)||(12358309-12358351)
chr2 (357-435)||(28245779-28245856)
chr2 (309-347)||(35171260-35171298)
chr2 (357-435)||(41195634-41195712)
chr2 (357-435)||(44977442-44977520)
chr2 (306-343)||(22353202-22353239)
chr2 (357-434)||(31578485-31578562)
chr2 (357-418)||(34215315-34215376)
chr2 (307-348)||(36909876-36909917)
chr2 (357-418)||(40700246-40700307)
chr2 (357-418)||(41042304-41042365)
chr2 (357-402)||(42372530-42372575)
chr2 (308-348)||(6365184-6365224)
chr2 (355-435)||(13711309-13711389)
chr2 (308-340)||(14891119-14891151)
chr2 (309-349)||(15283282-15283322)
chr2 (309-349)||(23391071-23391111)
chr2 (313-349)||(27939160-27939196)
chr2 (308-348)||(44484689-44484729)
[»] scaffold0087 (1 HSPs)
scaffold0087 (361-447)||(53292-53378)
[»] scaffold0662 (1 HSPs)
scaffold0662 (308-349)||(1076-1117)
[»] scaffold0154 (1 HSPs)
scaffold0154 (305-349)||(19723-19767)
[»] scaffold0013 (1 HSPs)
scaffold0013 (357-435)||(90010-90086)
[»] scaffold0032 (1 HSPs)
scaffold0032 (308-349)||(17434-17475)


Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 11 - 279
Target Start/End: Complemental strand, 32334150 - 32333874
Alignment:
Q  11 cagagactctacatgtttgatcaaggatgaagagagtctcacacttgagggagagattgttgtgattagcctagtgtgagttaaagtctcacgttggatg 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| | ||||||||||||||||||||||||||||    
T  32334150 cagagactctacatgtttgatcaaggatgaagagagtctcacacttaaggaagagattgttgtgattagtcgagtgtgagttaaagtctcacgttggatg 32334051  T
Q  111 gaaaatatgaggttgagcaacatataagcaagatgattcataaattgaatgacttaaagtttgtggtgatgatgtggtgtttaaaatcacttgtgtggtt 210  Q
    |||||||||||||||||| |||||||| | |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  32334050 gaaaatatgaggttgagcgacatataaacgagatgattcataaattaaatgacttaaagtttgtggtgataatgtggtgtttaaaatcacttgtgtggtt 32333951  T
Q  211 tct----------ttaatctaatgtgataattcaacccacagaggctctcccccatagttcaacaccaactttacatca 279  Q
    |||          |||||||||||||||||| |||||||| ||||  |||||||||||| |||||||||||||||||||    
T  32333950 tctattaatctaattaatctaatgtgataatccaacccacggagg--ctcccccatagtccaacaccaactttacatca 32333874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 357 - 435
Target Start/End: Original strand, 26595399 - 26595477
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaa 435  Q
    |||||||||||||||||||||||||| ||| |  ||||||| |||| ||||||||||||||| ||  ||||||||||||    
T  26595399 tctctcatactcacattatgtttttactttctctctctattgctttggtttttgtgtcaatacctcattttctttgtaa 26595477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 357 - 417
Target Start/End: Complemental strand, 17551399 - 17551339
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaat 417  Q
    |||||||||||||||||||||||||| |||||  |||||||  ||| ||||||||||||||    
T  17551399 tctctcatactcacattatgtttttactttatctctctattgttttggtttttgtgtcaat 17551339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 309 - 435
Target Start/End: Original strand, 30945822 - 30945942
Alignment:
Q  309 agagaaatgatatttgtacaaatattttgtgacaatttttactttctatctctcatactcacattatgtttttaatttatacctctattcctttagtttt 408  Q
    ||||||||||||||| |||||  ||||||||||||      ||||||  ||||||||||||||||||| ||||| |||||   ||||||  |||  ||||    
T  30945822 agagaaatgatatttatacaatcattttgtgacaa------ctttctccctctcatactcacattatgattttactttatctatctattgatttgatttt 30945915  T
Q  409 tgtgtcaataactacttttctttgtaa 435  Q
     ||| ||||| ||||||||||||||||    
T  30945916 cgtgccaatatctacttttctttgtaa 30945942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 349
Target Start/End: Original strand, 12501475 - 12501513
Alignment:
Q  311 agaaatgatatttgtacaaatattttgtgacaattttta 349  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  12501475 agaaatgatatttgtacaattattttgtgacaattttta 12501513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 435
Target Start/End: Original strand, 13423019 - 13423097
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaa 435  Q
    ||||||||||||||||||| |||||| ||| |  |||||||  ||||||||||||| |||||  || ||||||||||||    
T  13423019 tctctcatactcacattatatttttactttctctctctattattttagtttttgtgccaatacatatttttctttgtaa 13423097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 435
Target Start/End: Complemental strand, 32316945 - 32316871
Alignment:
Q  361 tcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaa 435  Q
    ||||||||||||||| |||||| |||||  ||||||| |||| |||||||||||| || ||  ||||||||||||    
T  32316945 tcatactcacattatctttttactttatctctctattgctttggtttttgtgtcagtacctcattttctttgtaa 32316871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 435
Target Start/End: Original strand, 34047437 - 34047515
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaa 435  Q
    ||||||||||||||||||| ||||||  ||||  ||||||| |||| ||||||||| ||||| ||  ||||||||||||    
T  34047437 tctctcatactcacattatctttttatcttatctctctattgctttggtttttgtgccaatatctctttttctttgtaa 34047515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 309 - 435
Target Start/End: Complemental strand, 25127905 - 25127773
Alignment:
Q  309 agagaaatgatatttgtacaaatattttgtgacaattttt------actttctatctctcatactcacattatgtttttaatt--tatacctctattcct 400  Q
    |||||||||||||||||||||  ||||||| |||| ||||      |||||||  |||| |||||||||||||||||||| ||  | |  ||||||| ||    
T  25127905 agagaaatgatatttgtacaaccattttgtaacaacttttgtgaaaactttct--ctctgatactcacattatgtttttactttctctctctctattgct 25127808  T
Q  401 ttagtttttgtgtcaataactacttttctttgtaa 435  Q
    || ||||  ||||||||| ||||||||||||||||    
T  25127807 ttggtttccgtgtcaatacctacttttctttgtaa 25127773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 309 - 346
Target Start/End: Original strand, 33656697 - 33656734
Alignment:
Q  309 agagaaatgatatttgtacaaatattttgtgacaattt 346  Q
    |||||||||||||||||||||||||||||| |||||||    
T  33656697 agagaaatgatatttgtacaaatattttgtaacaattt 33656734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 434
Target Start/End: Complemental strand, 2242094 - 2241969
Alignment:
Q  309 agagaaatgatatttgtacaaatattttgtgacaattttt------actttctatctctcatactcacattatgtttttaatttatacctctattccttt 402  Q
    |||||||||||||||| ||||  ||||| |||||||||||      |||||||  ||||||||||||||||| ||||||| |||    ||||||| ||||    
T  2242094 agagaaatgatatttgaacaatcattttttgacaatttttgtgacaactttct--ctctcatactcacattaagtttttatttt----ctctattgcttt 2242001  T
Q  403 agtttttgtgtcaataactacttttctttgta 434  Q
     ||||||||||||||  ||  |||||||||||    
T  2242000 ggtttttgtgtcaatgcctcattttctttgta 2241969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 435
Target Start/End: Original strand, 10335599 - 10335679
Alignment:
Q  355 tatctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaa 435  Q
    ||||||||||||||||||||| |||||| ||| |  ||||||| |||| ||||  |||||| || ||||||| ||||||||    
T  10335599 tatctctcatactcacattatttttttactttctctctctattactttggtttccgtgtcactatctactttcctttgtaa 10335679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 348
Target Start/End: Original strand, 11785354 - 11785393
Alignment:
Q  309 agagaaatgatatttgtacaaatattttgtgacaattttt 348  Q
    |||||||||||||||||||||  |||||||||||||||||    
T  11785354 agagaaatgatatttgtacaaccattttgtgacaattttt 11785393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 348
Target Start/End: Original strand, 27334857 - 27334896
Alignment:
Q  309 agagaaatgatatttgtacaaatattttgtgacaattttt 348  Q
    ||||||||||||||||||||| ||||||||||||| ||||    
T  27334857 agagaaatgatatttgtacaactattttgtgacaactttt 27334896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 348
Target Start/End: Original strand, 27395597 - 27395636
Alignment:
Q  309 agagaaatgatatttgtacaaatattttgtgacaattttt 348  Q
    ||||||||||||||||||||| ||||||||||||| ||||    
T  27395597 agagaaatgatatttgtacaactattttgtgacaactttt 27395636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 415
Target Start/End: Complemental strand, 5080584 - 5080530
Alignment:
Q  361 tcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtca 415  Q
    ||||||||||||||| |||||| ||| |  ||||||| |||||||||||||||||    
T  5080584 tcatactcacattatttttttactttctctctctattgctttagtttttgtgtca 5080530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 347
Target Start/End: Original strand, 31413539 - 31413573
Alignment:
Q  313 aaatgatatttgtacaaatattttgtgacaatttt 347  Q
    ||||||||||||||||| |||||||||||||||||    
T  31413539 aaatgatatttgtacaattattttgtgacaatttt 31413573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 347
Target Start/End: Original strand, 6256435 - 6256472
Alignment:
Q  310 gagaaatgatatttgtacaaatattttgtgacaatttt 347  Q
    |||||||||||||||||||| |||||| ||||||||||    
T  6256435 gagaaatgatatttgtacaattattttttgacaatttt 6256472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 418
Target Start/End: Complemental strand, 22079584 - 22079523
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaata 418  Q
    ||||||| |||||||||||||||||| ||| |  ||||||| ||||  ||||||||||||||    
T  22079584 tctctcacactcacattatgtttttactttctctctctattgctttgatttttgtgtcaata 22079523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 348
Target Start/End: Original strand, 3401082 - 3401122
Alignment:
Q  308 tagagaaatgatatttgtacaaatattttgtgacaattttt 348  Q
    |||| ||||||||||||||||| |||||||||| |||||||    
T  3401082 tagataaatgatatttgtacaactattttgtgataattttt 3401122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 342
Target Start/End: Original strand, 30714676 - 30714712
Alignment:
Q  306 aatagagaaatgatatttgtacaaatattttgtgaca 342  Q
    ||||||||||||||||||||||||  |||||||||||    
T  30714676 aatagagaaatgatatttgtacaatcattttgtgaca 30714712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 43)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 309 - 416
Target Start/End: Complemental strand, 50775229 - 50775118
Alignment:
Q  309 agagaaatgatatttgtacaaatattttgtgacaattttt------actttctatctctcatactcacattatgtttttaatttatacctctattccttt 402  Q
    |||| |||||||||| ||||| |||||| |||||||||||      |||||||  ||||||||||||||||||||||||| |||||  ||||||| ||||    
T  50775229 agagtaatgatatttatacaattattttttgacaatttttgtgacaactttct--ctctcatactcacattatgtttttactttatctctctattgcttt 50775132  T
Q  403 agtttttgtgtcaa 416  Q
     |||||||||||||    
T  50775131 ggtttttgtgtcaa 50775118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 308 - 418
Target Start/End: Complemental strand, 9567034 - 9566920
Alignment:
Q  308 tagagaaatgatatttgtacaaatattttgtgacaattttt------actttctatctctcatactcacattatgtttttaatttatacctctattcctt 401  Q
    ||||||||||||||||| ||||  ||||| |||||| ||||      |||||||  ||||||||||||||||||||||||| ||| |  ||||||| |||    
T  9567034 tagagaaatgatatttgaacaaccattttttgacaacttttgtgacaactttct--ctctcatactcacattatgtttttactttctcactctattgctt 9566937  T
Q  402 tagtttttgtgtcaata 418  Q
    | |||||||||||||||    
T  9566936 tggtttttgtgtcaata 9566920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 357 - 435
Target Start/End: Original strand, 31433541 - 31433618
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaa 435  Q
    ||||||||||||||||||||||||| ||||||  |||||||  ||||||||| ||||||||| |||| || ||||||||    
T  31433541 tctctcatactcacattatgttttt-atttatctctctattattttagttttcgtgtcaatacctacattactttgtaa 31433618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 357 - 433
Target Start/End: Original strand, 14983823 - 14983899
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgt 433  Q
    ||||||||| |||||||||||||||| ||| |  |||||||  ||||||||||||||||||| ||  ||||||||||    
T  14983823 tctctcatattcacattatgtttttactttctctctctattgttttagtttttgtgtcaatatctctttttctttgt 14983899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 309 - 348
Target Start/End: Original strand, 26547233 - 26547272
Alignment:
Q  309 agagaaatgatatttgtacaaatattttgtgacaattttt 348  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  26547233 agagaaatgatatttgtacatatattttgtgacaattttt 26547272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 385
Target Start/End: Complemental strand, 16836175 - 16836108
Alignment:
Q  310 gagaaatgatatttgtacaaatattttgtgacaatttttactttctatctctcatactcacattatgtttttaatt 385  Q
    ||||||||||||||||||||  |||||||||||| ||||        |||||||||||||||||||||||||||||    
T  16836175 gagaaatgatatttgtacaatcattttgtgacaactttt--------tctctcatactcacattatgtttttaatt 16836108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 308 - 377
Target Start/End: Original strand, 26101392 - 26101464
Alignment:
Q  308 tagagaaatgatatttgtacaaatattttgtgacaattttt---actttctatctctcatactcacattatgt 377  Q
    |||||||||||||||||||||| |||||||||| |||||||     | ||||||||||||||||| |||||||    
T  26101392 tagagaaatgatatttgtacaattattttgtgataatttttggatatctctatctctcatactcatattatgt 26101464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 371 - 435
Target Start/End: Original strand, 33173570 - 33173635
Alignment:
Q  371 attatgtttttaatttatacctctattcctttagtttttgtgtcaataacta-cttttctttgtaa 435  Q
    ||||||| |||| |||||  |||||||||||||||||| ||||||||| ||| |||||||||||||    
T  33173570 attatgtctttactttatctctctattcctttagttttcgtgtcaatacctaccttttctttgtaa 33173635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 300 - 348
Target Start/End: Complemental strand, 7372029 - 7371981
Alignment:
Q  300 atatacaatagagaaatgatatttgtacaaatattttgtgacaattttt 348  Q
    |||||| ||||||||||||||||||||||| || ||| |||||||||||    
T  7372029 atatactatagagaaatgatatttgtacaactaatttatgacaattttt 7371981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 435
Target Start/End: Complemental strand, 31317445 - 31317373
Alignment:
Q  363 atactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaa 435  Q
    |||||||||||||||||||| |||  | |||||||  ||||||||  ||||||||| |||| |||||||||||    
T  31317445 atactcacattatgtttttacttttcatctctattattttagtttccgtgtcaatatctacatttctttgtaa 31317373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 308 - 348
Target Start/End: Original strand, 39669804 - 39669844
Alignment:
Q  308 tagagaaatgatatttgtacaaatattttgtgacaattttt 348  Q
    ||||||||||||||||||||||  |||||||||||||||||    
T  39669804 tagagaaatgatatttgtacaaccattttgtgacaattttt 39669844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 308 - 421
Target Start/End: Complemental strand, 49647223 - 49647107
Alignment:
Q  308 tagagaaatgatatttgtacaaatattttgtgacaatttttactt----tctatctctcatactcacattatgtttttaatttatacctctattccttta 403  Q
    ||||||||||||||||| |||| |||||| ||||||||||||  |    | ||||||||||| |||||||||  ||||| ||| |  |||||||  |||     
T  49647223 tagagaaatgatatttgaacaactattttttgacaatttttatgtgaactttatctctcatattcacattat-attttactttctctctctattgttttg 49647125  T
Q  404 gtttttgtgtcaataact 421  Q
    ||||||||||||||||||    
T  49647124 gtttttgtgtcaataact 49647107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 411
Target Start/End: Original strand, 3558897 - 3558949
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgt 411  Q
    |||||||||||||||||||||||||| ||| |  ||||||| |||||||||||||    
T  3558897 tctctcatactcacattatgtttttactttct--ctctattactttagtttttgt 3558949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 348
Target Start/End: Original strand, 18610772 - 18610811
Alignment:
Q  309 agagaaatgatatttgtacaaatattttgtgacaattttt 348  Q
    ||||||||||||||||||||| ||||||||||||| ||||    
T  18610772 agagaaatgatatttgtacaactattttgtgacaactttt 18610811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 435
Target Start/End: Complemental strand, 18639726 - 18639650
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaa 435  Q
    |||||| |||||||||||| ||||||  ||||  |||||||  ||||||||| ||||||||| |||||| |||||||||    
T  18639726 tctctcttactcacattatatttttatcttat--ctctattgttttagttttcgtgtcaatacctacttatctttgtaa 18639650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 349
Target Start/End: Complemental strand, 45350166 - 45350127
Alignment:
Q  310 gagaaatgatatttgtacaaatattttgtgacaattttta 349  Q
    |||||||||||||||||||| |||||||||| ||||||||    
T  45350166 gagaaatgatatttgtacaattattttgtgataattttta 45350127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 348
Target Start/End: Original strand, 46910403 - 46910442
Alignment:
Q  309 agagaaatgatatttgtacaaatattttgtgacaattttt 348  Q
    ||||||||||||| ||||||| ||||||||||||||||||    
T  46910403 agagaaatgatatatgtacaactattttgtgacaattttt 46910442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 435
Target Start/End: Complemental strand, 49065436 - 49065307
Alignment:
Q  309 agagaaatgatatttgtacaaatattttgtgacaattttt------actttctatctctcatactcacattatgtttttaatttatacctctattccttt 402  Q
    |||||||||||||||| |||| |||||| ||||||| |||      |||||   ||| |||||||||||||||||||||| ||| |  ||||||| ||||    
T  49065436 agagaaatgatatttgaacaactattttttgacaatatttgtgacaacttt---tctttcatactcacattatgtttttactttctctctctattgcttt 49065340  T
Q  403 agtttttgtgtcaataactacttttctttgtaa 435  Q
     ||||||||| |||||  |  ||||||||||||    
T  49065339 ggtttttgtgccaatacttcattttctttgtaa 49065307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 415
Target Start/End: Original strand, 649819 - 649877
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtca 415  Q
    ||||||||||||||||||| |||||| ||| |  ||||||| |||| ||||||||||||    
T  649819 tctctcatactcacattatctttttactttctctctctattgctttggtttttgtgtca 649877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 306 - 348
Target Start/End: Original strand, 1689387 - 1689429
Alignment:
Q  306 aatagagaaatgatatttgtacaaatattttgtgacaattttt 348  Q
    |||||||||||||||||||||||| |||||| | |||||||||    
T  1689387 aatagagaaatgatatttgtacaactattttataacaattttt 1689429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 431
Target Start/End: Complemental strand, 6950001 - 6949927
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttcttt 431  Q
    ||||||||||| |||||||||||||||||| |  ||||| | ||||  |||| || |||||| ||||||||||||    
T  6950001 tctctcatacttacattatgtttttaatttctctctctactgctttgtttttcgtatcaatatctacttttcttt 6949927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 348
Target Start/End: Original strand, 7648250 - 7648288
Alignment:
Q  310 gagaaatgatatttgtacaaatattttgtgacaattttt 348  Q
    |||||||||||||||||||| |||||||| |||||||||    
T  7648250 gagaaatgatatttgtacaattattttgtaacaattttt 7648288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 435
Target Start/End: Original strand, 8846024 - 8846102
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaa 435  Q
    |||||||||||||||| ||||||||| ||| |   |||||| |||| |||||||||||||||  |  ||||||||||||    
T  8846024 tctctcatactcacatgatgtttttactttttctttctattgctttggtttttgtgtcaatacatctttttctttgtaa 8846102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 447
Target Start/End: Original strand, 30745041 - 30745127
Alignment:
Q  361 tcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaagtgtttggttgt 447  Q
    ||||||||| |||||  ||||| |||||  |||||||  ||| |||||||||||||||  || ||||||||||||| || |||||||    
T  30745041 tcatactcatattataattttactttatctctctattgttttggtttttgtgtcaatacataattttctttgtaagagtatggttgt 30745127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 447
Target Start/End: Original strand, 30766492 - 30766578
Alignment:
Q  361 tcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaagtgtttggttgt 447  Q
    ||||||||| |||||  ||||| |||||  |||||||  ||| |||||||||||||||  || ||||||||||||| || |||||||    
T  30766492 tcatactcatattataattttactttatctctctattgttttggtttttgtgtcaatacataattttctttgtaagagtatggttgt 30766578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 348
Target Start/End: Original strand, 32938859 - 32938897
Alignment:
Q  310 gagaaatgatatttgtacaaatattttgtgacaattttt 348  Q
    |||||||||||||||||||| || |||||||||||||||    
T  32938859 gagaaatgatatttgtacaattaatttgtgacaattttt 32938897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 349
Target Start/End: Complemental strand, 34941994 - 34941952
Alignment:
Q  307 atagagaaatgatatttgtacaaatattttgtgacaattttta 349  Q
    ||||||||||||||||||||| |  ||||||||||||||||||    
T  34941994 atagagaaatgatatttgtactatcattttgtgacaattttta 34941952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 435
Target Start/End: Original strand, 48261194 - 48261268
Alignment:
Q  361 tcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaa 435  Q
    |||||||||||||||||||||| ||| |  ||||||| |||| ||||||||| ||||| ||  ||| ||||||||    
T  48261194 tcatactcacattatgtttttactttctctctctattgctttggtttttgtgccaatacctcttttcctttgtaa 48261268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 347
Target Start/End: Complemental strand, 48325839 - 48325801
Alignment:
Q  309 agagaaatgatatttgtacaaatattttgtgacaatttt 347  Q
    |||||||||||||||||||||  ||||||||||||||||    
T  48325839 agagaaatgatatttgtacaaccattttgtgacaatttt 48325801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 435
Target Start/End: Complemental strand, 51436843 - 51436713
Alignment:
Q  310 gagaaatgatatttgtacaaatattttgtgacaattttt------actttctatctctcatactcacattatgtttttaatttatacctctattccttta 403  Q
    ||||||||||||||| ||||  |||||| ||||||||||      |||||  |||||||||||||||||| |||||||| |||||  || ||||  |||     
T  51436843 gagaaatgatatttgcacaataattttgagacaatttttgtgacaacttt--atctctcatactcacattttgtttttactttatctctttattgttttg 51436746  T
Q  404 gtttttgtgtcaataactac-ttttctttgtaa 435  Q
    |||||  |||||||| |||| ||||||||||||    
T  51436745 gttttcatgtcaatacctactttttctttgtaa 51436713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 435
Target Start/End: Original strand, 11597692 - 11597765
Alignment:
Q  362 catactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaa 435  Q
    ||||||||||||||||||||| ||| |  |||||||  ||| ||||| |||  |||| ||||||||||||||||    
T  11597692 catactcacattatgtttttactttctctctctattgttttggttttcgtgctaatatctacttttctttgtaa 11597765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 347
Target Start/End: Original strand, 14442260 - 14442297
Alignment:
Q  310 gagaaatgatatttgtacaaatattttgtgacaatttt 347  Q
    |||| ||||||||||||||| |||||||||||||||||    
T  14442260 gagagatgatatttgtacaactattttgtgacaatttt 14442297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 431
Target Start/End: Complemental strand, 18512359 - 18512290
Alignment:
Q  362 catactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttcttt 431  Q
    |||||| ||| |||||||||| |||||  ||||||| ||||||||||| |||||||| ||  ||||||||    
T  18512359 catacttacactatgtttttactttatctctctattgctttagtttttatgtcaatacctcattttcttt 18512290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 347
Target Start/End: Original strand, 43937728 - 43937765
Alignment:
Q  310 gagaaatgatatttgtacaaatattttgtgacaatttt 347  Q
    |||||||||||||||||| |||||||| ||||||||||    
T  43937728 gagaaatgatatttgtaccaatattttttgacaatttt 43937765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 345
Target Start/End: Complemental strand, 4906891 - 4906855
Alignment:
Q  309 agagaaatgatatttgtacaaatattttgtgacaatt 345  Q
    |||||||||||||||| |||| |||||||||||||||    
T  4906891 agagaaatgatatttgcacaactattttgtgacaatt 4906855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 343
Target Start/End: Complemental strand, 9882729 - 9882697
Alignment:
Q  311 agaaatgatatttgtacaaatattttgtgacaa 343  Q
    ||||||||||||||||||| |||||||||||||    
T  9882729 agaaatgatatttgtacaactattttgtgacaa 9882697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 435
Target Start/End: Original strand, 25672390 - 25672470
Alignment:
Q  355 tatctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaa 435  Q
    ||||| ||||||| | |||||||||||| ||| |   |||||| ||||||||||||||||||||  |  ||||||||||||    
T  25672390 tatctttcatacttatattatgtttttattttctctttctattactttagtttttgtgtcaatactttattttctttgtaa 25672470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 353
Target Start/End: Original strand, 30772611 - 30772655
Alignment:
Q  309 agagaaatgatatttgtacaaatattttgtgacaatttttacttt 353  Q
    |||||||||||||||||  || |||||||||||||||||| ||||    
T  30772611 agagaaatgatatttgtctaactattttgtgacaattttttcttt 30772655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 418
Target Start/End: Original strand, 36954710 - 36954767
Alignment:
Q  359 tctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaata 418  Q
    |||||||||||||||||||||||| ||| |  |||| || |||||||| |||||||||||    
T  36954710 tctcatactcacattatgtttttactttct--ctctcttgctttagttgttgtgtcaata 36954767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 349
Target Start/End: Original strand, 41885720 - 41885760
Alignment:
Q  309 agagaaatgatatttgtacaaatattttgtgacaattttta 349  Q
    ||||||||||||||||||||| |||||||||| | ||||||    
T  41885720 agagaaatgatatttgtacaattattttgtgatagttttta 41885760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 435
Target Start/End: Original strand, 43775258 - 43775334
Alignment:
Q  359 tctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaa 435  Q
    |||||||||| |||||| |||||| ||| |  |||||||  |||||||||||| |||||| ||  ||||||||||||    
T  43775258 tctcatactcgcattatctttttactttctctctctattgttttagtttttgtatcaatatctcattttctttgtaa 43775334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 348
Target Start/End: Original strand, 46902611 - 46902651
Alignment:
Q  308 tagagaaatgatatttgtacaaatattttgtgacaattttt 348  Q
    ||||||||||||| ||||| || ||||||||||||||||||    
T  46902611 tagagaaatgatacttgtataactattttgtgacaattttt 46902651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 435
Target Start/End: Original strand, 49660228 - 49660308
Alignment:
Q  355 tatctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaa 435  Q
    ||||||||||||||||||||| |||||| ||| |  ||||||| |||| ||||  |||||| |  ||||||| ||||||||    
T  49660228 tatctctcatactcacattatttttttactttctctctctattactttggtttccgtgtcactgtctactttcctttgtaa 49660308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 309 - 402
Target Start/End: Complemental strand, 21353587 - 21353492
Alignment:
Q  309 agagaaatgatatttgtacaaatattttgtgacaatttttact--ttctatctctcatactcacattatgtttttaatttatacctctattccttt 402  Q
    |||||||||||| |||||||| |||||||||| ||||| || |  || ||| |||||||||||||||||||||||| |||||  ||||||| ||||    
T  21353587 agagaaatgatacttgtacaattattttgtgataatttgtaataattttatttctcatactcacattatgtttttagtttatttctctattgcttt 21353492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 307 - 435
Target Start/End: Original strand, 13309879 - 13310011
Alignment:
Q  307 atagagaaatgatatttgtacaaatattttgtgacaattttt------actttctatctctcatactcacattatgtttttaatttatacctctattcct 400  Q
    ||||| |||||||||||| |||| |||||| |||||||||||      |||||||  |||||||| |||||||||||||||| ||| |  ||||| | ||    
T  13309879 atagaaaaatgatatttgaacaactattttttgacaatttttgtgataactttct--ctctcatattcacattatgtttttactttctctctctactact 13309976  T
Q  401 ttagtttttgtgtcaataactacttttctttgtaa 435  Q
    || |||||||||| |||| ||  ||||||||||||    
T  13309977 ttggtttttgtgttaatacctcattttctttgtaa 13310011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 435
Target Start/End: Complemental strand, 33958276 - 33958202
Alignment:
Q  361 tcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaa 435  Q
    ||||||||||||||| |||||| ||| |  ||||||| |||| ||||||||||||||| ||  ||||||||||||    
T  33958276 tcatactcacattatatttttactttctctctctattgctttggtttttgtgtcaatatctctttttctttgtaa 33958202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 359 - 435
Target Start/End: Original strand, 33599015 - 33599090
Alignment:
Q  359 tctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaa 435  Q
    |||||||||||||||||||||||| ||| |  ||||||| |||||  ||||||||||||| ||  ||||||||||||    
T  33599015 tctcatactcacattatgtttttactttttctctctattgcttta-attttgtgtcaatatctctttttctttgtaa 33599090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 432
Target Start/End: Original strand, 4719701 - 4719776
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttg 432  Q
    |||||||||||||||||||||||||| ||| |  ||||||| ||||  |||||||| |||||  | ||||||||||    
T  4719701 tctctcatactcacattatgtttttactttttctctctattgctttgatttttgtgccaatactttcttttctttg 4719776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 386
Target Start/End: Original strand, 20270619 - 20270650
Alignment:
Q  355 tatctctcatactcacattatgtttttaattt 386  Q
    ||||||||||||||||||||||||||||||||    
T  20270619 tatctctcatactcacattatgtttttaattt 20270650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 435
Target Start/End: Original strand, 20770182 - 20770260
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactac-ttttctttgtaa 435  Q
    ||||||||||||||||||| |||||| |||||  ||||||| ||||  |||| ||||||||| |||| ||||||||||||    
T  20770182 tctctcatactcacattat-tttttactttatctctctattgctttgattttcgtgtcaatacctactttttctttgtaa 20770260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 228
Target Start/End: Complemental strand, 27594555 - 27594485
Alignment:
Q  158 aatgacttaaagtttgtggtgatgatgtggtgtttaaaatcacttgtgtggtttc-tttaatctaatgtgat 228  Q
    |||||||||| ||||  ||||| ||||||||||  |||||||||||||||||||| |||||||||| |||||    
T  27594555 aatgacttaaggtttaaggtgaagatgtggtgtc-aaaatcacttgtgtggtttcttttaatctaacgtgat 27594485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 348
Target Start/End: Original strand, 38500942 - 38500981
Alignment:
Q  309 agagaaatgatatttgtacaaatattttgtgacaattttt 348  Q
    |||||||||||||||||||||  |||||||||||||||||    
T  38500942 agagaaatgatatttgtacaaccattttgtgacaattttt 38500981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 348
Target Start/End: Original strand, 6538870 - 6538908
Alignment:
Q  310 gagaaatgatatttgtacaaatattttgtgacaattttt 348  Q
    |||||||||||||||||||| |||||||||| |||||||    
T  6538870 gagaaatgatatttgtacaattattttgtgataattttt 6538908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 343
Target Start/End: Complemental strand, 14508229 - 14508195
Alignment:
Q  309 agagaaatgatatttgtacaaatattttgtgacaa 343  Q
    ||||||||||||||||||||| |||||||||||||    
T  14508229 agagaaatgatatttgtacaactattttgtgacaa 14508195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 435
Target Start/End: Original strand, 16690554 - 16690628
Alignment:
Q  361 tcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaa 435  Q
    ||||||||||||||| |||||| ||| |  ||||||| |||| ||||||||| ||| |  |||||||||||||||    
T  16690554 tcatactcacattatatttttactttctttctctattgctttggtttttgtgccaacacatacttttctttgtaa 16690628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 348
Target Start/End: Original strand, 19983841 - 19983879
Alignment:
Q  310 gagaaatgatatttgtacaaatattttgtgacaattttt 348  Q
    |||||||||||||||||||| |||||| |||||||||||    
T  19983841 gagaaatgatatttgtacaattattttatgacaattttt 19983879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 435
Target Start/End: Original strand, 22098306 - 22098384
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaa 435  Q
    ||||||||||||||||||| |||||| ||| |  ||||||| ||||  | |||||| |||||  |||||||||||||||    
T  22098306 tctctcatactcacattatatttttactttctctctctattactttgatatttgtgccaatacatacttttctttgtaa 22098384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 434
Target Start/End: Original strand, 27546116 - 27546193
Alignment:
Q  359 tctcatactcacattatgtttttaatttatacctcta--ttcctttagtttttgtgtcaataactacttttctttgta 434  Q
    ||||||||||||||||| |||||| |||||| |||||  || ||||  ||||| |||||||| ||| |||||||||||    
T  27546116 tctcatactcacattatatttttactttatatctctattttgctttgatttttatgtcaatatctatttttctttgta 27546193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 348
Target Start/End: Original strand, 28501592 - 28501630
Alignment:
Q  310 gagaaatgatatttgtacaaatattttgtgacaattttt 348  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  28501592 gagaaatgatatttgtacaaccattttgtgacaattttt 28501630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 415
Target Start/End: Original strand, 36738998 - 36739056
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtca 415  Q
    ||||||||||||||||||| |||||| ||| |  ||||||| |||| ||||||||||||    
T  36738998 tctctcatactcacattatctttttactttctctctctattgctttggtttttgtgtca 36739056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 431
Target Start/End: Original strand, 40829465 - 40829539
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttcttt 431  Q
    ||||||||||||||||||| |||||| |||||  ||||||| ||||| |||| |||  ||||  |||||||||||    
T  40829465 tctctcatactcacattatatttttactttatctctctattactttaattttcgtgctaatacatacttttcttt 40829539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 418
Target Start/End: Complemental strand, 6758811 - 6758750
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaata 418  Q
    ||||| ||||||||||||| |||||| |||||  ||||||| |||| ||||| |||||||||    
T  6758811 tctcttatactcacattatatttttattttatctctctattgctttggttttcgtgtcaata 6758750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 348
Target Start/End: Original strand, 8959157 - 8959198
Alignment:
Q  307 atagagaaatgatatttgtacaaatattttgtgacaattttt 348  Q
    ||||||||||||||||||||||| |||| |||||||| ||||    
T  8959157 atagagaaatgatatttgtacaactattatgtgacaactttt 8959198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 386
Target Start/End: Original strand, 12401618 - 12401647
Alignment:
Q  357 tctctcatactcacattatgtttttaattt 386  Q
    ||||||||||||||||||||||||||||||    
T  12401618 tctctcatactcacattatgtttttaattt 12401647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 418
Target Start/End: Original strand, 14532555 - 14532616
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaata 418  Q
    ||||||||||||||||| |||||||| ||| |  ||||||| |||| ||| |||||||||||    
T  14532555 tctctcatactcacattttgtttttactttctttctctattgctttggttcttgtgtcaata 14532616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 418
Target Start/End: Original strand, 29463038 - 29463107
Alignment:
Q  349 actttctatctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaata 418  Q
    ||||||| ||||||||||||||||| |||||||| ||| |  ||||||| ||||  |||||||| |||||    
T  29463038 actttctctctctcatactcacattttgtttttattttctctctctattgctttgatttttgtgccaata 29463107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 348
Target Start/End: Original strand, 2050925 - 2050965
Alignment:
Q  308 tagagaaatgatatttgtacaaatattttgtgacaattttt 348  Q
    ||||||||||||||||||||||  ||||||| |||||||||    
T  2050925 tagagaaatgatatttgtacaaccattttgtaacaattttt 2050965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 435
Target Start/End: Original strand, 5168231 - 5168311
Alignment:
Q  355 tatctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaa 435  Q
    ||||||||||||||||||||| |||||| ||| |  ||||||| ||||  |||||||| || || ||  ||||||||||||    
T  5168231 tatctctcatactcacattatctttttactttctctctctattgctttgatttttgtgccactacctcattttctttgtaa 5168311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 349
Target Start/End: Original strand, 5996666 - 5996706
Alignment:
Q  309 agagaaatgatatttgtacaaatattttgtgacaattttta 349  Q
    ||||||||||||||||||||| |||||| | ||||||||||    
T  5996666 agagaaatgatatttgtacaactattttttaacaattttta 5996706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 435
Target Start/End: Original strand, 6596390 - 6596459
Alignment:
Q  364 tactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaa 435  Q
    ||||||||||||||||||| ||| |  ||||||| |||| |||||||||| |||| ||  ||||||||||||    
T  6596390 tactcacattatgtttttactttct--ctctattgctttggtttttgtgttaatacctcattttctttgtaa 6596459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 348
Target Start/End: Original strand, 15909228 - 15909268
Alignment:
Q  308 tagagaaatgatatttgtacaaatattttgtgacaattttt 348  Q
    ||||||| | |||||||||||| ||||||||||||||||||    
T  15909228 tagagaagtaatatttgtacaattattttgtgacaattttt 15909268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 348
Target Start/End: Complemental strand, 27005552 - 27005512
Alignment:
Q  308 tagagaaatgatatttgtacaaatattttgtgacaattttt 348  Q
    |||||||||||||||||||||| |||||| ||| |||||||    
T  27005552 tagagaaatgatatttgtacaattattttttgataattttt 27005512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 349
Target Start/End: Original strand, 29803224 - 29803264
Alignment:
Q  309 agagaaatgatatttgtacaaatattttgtgacaattttta 349  Q
    ||||||||||||||||||||| |||||| |||||| |||||    
T  29803224 agagaaatgatatttgtacaactattttttgacaactttta 29803264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 349
Target Start/End: Original strand, 34428159 - 34428199
Alignment:
Q  309 agagaaatgatatttgtacaaatattttgtgacaattttta 349  Q
    ||||||||||||||||||||| |||||| |||||| |||||    
T  34428159 agagaaatgatatttgtacaactattttttgacaactttta 34428199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 348
Target Start/End: Original strand, 41192585 - 41192625
Alignment:
Q  308 tagagaaatgatatttgtacaaatattttgtgacaattttt 348  Q
    |||||||||||||||||||||| |||||||  |||||||||    
T  41192585 tagagaaatgatatttgtacaactattttgctacaattttt 41192625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 435
Target Start/End: Original strand, 41321307 - 41321383
Alignment:
Q  359 tctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaa 435  Q
    ||||||||||||||||| ||| || ||| |  ||||||| |||| ||||||||||||||| ||  ||| ||||||||    
T  41321307 tctcatactcacattatctttgtactttctctctctattactttggtttttgtgtcaatacctcatttcctttgtaa 41321383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 313 - 432
Target Start/End: Complemental strand, 34862 - 34739
Alignment:
Q  313 aaatgatatttgtacaaatattttgtgacaattttta------ctttctatctctcatactcacattatgtttttaatttatacctctattcctttagtt 406  Q
    ||||||||||||||||| || ||||||||||||||||      ||||||  ||||||||||||||||||||||||| ||| |   | |||| |||| |||    
T  34862 aaatgatatttgtacaattaatttgtgacaatttttatgacaactttct--ctctcatactcacattatgtttttactttctttttttattgctttggtt 34765  T
Q  407 tttgtgtcaataactacttttctttg 432  Q
    || |||||| |||| |||||||||||    
T  34764 ttcgtgtcagtaaccacttttctttg 34739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 84 - 210
Target Start/End: Original strand, 11442859 - 11442985
Alignment:
Q  84 gtgtgagttaaagtctcacgttggatggaaaatatgaggttgagcaacatataagcaagatgattcataaattgaatgacttaaagtttgtggtgatgat 183  Q
    ||||||||||||||| |||||||||||||| |  ||||||||||||||||| |||  ||| ||  |||||| | |||| ||||| ||||  |||||  ||    
T  11442859 gtgtgagttaaagtcccacgttggatggaagagttgaggttgagcaacatacaagtgagaggacccataaactcaatgccttaaggttttgggtgaatat 11442958  T
Q  184 gtggtgtttaaaatcacttgtgtggtt 210  Q
    |||||||  ||  ||||||||||||||    
T  11442959 gtggtgtccaatctcacttgtgtggtt 11442985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 359 - 435
Target Start/End: Original strand, 40517310 - 40517386
Alignment:
Q  359 tctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaa 435  Q
    ||||||||||| |||||||||||| |||||   |||||| ||||  |||| ||||||||| ||||||||||||||||    
T  40517310 tctcatactcatattatgtttttattttatctttctattgctttgattttcgtgtcaatatctacttttctttgtaa 40517386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 355 - 418
Target Start/End: Complemental strand, 3547182 - 3547119
Alignment:
Q  355 tatctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaata 418  Q
    ||||||||||||| |||||||||||||| ||| |  ||||||| |||| |||||||||||||||    
T  3547182 tatctctcatacttacattatgtttttattttctttctctattactttggtttttgtgtcaata 3547119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 310 - 349
Target Start/End: Complemental strand, 37568685 - 37568646
Alignment:
Q  310 gagaaatgatatttgtacaaatattttgtgacaattttta 349  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  37568685 gagaaatgatatttgtacaaacattttgtgacaattttta 37568646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 435
Target Start/End: Complemental strand, 5740806 - 5740728
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaa 435  Q
    |||||||||||||||||||||||||| ||| |  |||||||  ||| ||||||||||| ||| ||  ||||||||||||    
T  5740806 tctctcatactcacattatgtttttactttctctctctattgttttggtttttgtgtcgatacctctttttctttgtaa 5740728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 435
Target Start/End: Complemental strand, 11253563 - 11253485
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaa 435  Q
    ||||||||||| ||||||| |||||| ||| |  ||||||| |||| ||||||||||||||| ||  ||||||||||||    
T  11253563 tctctcatacttacattatctttttattttctctctctattgctttggtttttgtgtcaatacctcattttctttgtaa 11253485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 435
Target Start/End: Complemental strand, 12735032 - 12734954
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaa 435  Q
    ||||||||||||| ||||||||||||  ||||  || |||| ||||  |||||||||||||| ||||||||| ||||||    
T  12735032 tctctcatactcatattatgtttttaccttatctctatattactttgatttttgtgtcaatacctacttttcattgtaa 12734954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 435
Target Start/End: Original strand, 35067211 - 35067289
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaa 435  Q
    ||||||||||||||||||| |||||| ||| |  ||||||| |||| ||||||||| ||| |  |||||||||||||||    
T  35067211 tctctcatactcacattatatttttactttctctctctattgctttggtttttgtgccaacacatacttttctttgtaa 35067289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 415
Target Start/End: Complemental strand, 5277522 - 5277462
Alignment:
Q  355 tatctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtca 415  Q
    ||||||||||||||||||||| |||||| ||| |  ||||||| ||| |||||||||||||    
T  5277522 tatctctcatactcacattatctttttactttctctctctattgcttaagtttttgtgtca 5277462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 349
Target Start/End: Original strand, 6004943 - 6004983
Alignment:
Q  309 agagaaatgatatttgtacaaatattttgtgacaattttta 349  Q
    ||||||||||||||||||||| || ||||||||||||||||    
T  6004943 agagaaatgatatttgtacaactactttgtgacaattttta 6004983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 300 - 348
Target Start/End: Original strand, 36064020 - 36064068
Alignment:
Q  300 atatacaatagagaaatgatatttgtacaaatattttgtgacaattttt 348  Q
    ||||| ||||||||||||||||||||||||  |||||||||||| ||||    
T  36064020 atataaaatagagaaatgatatttgtacaatcattttgtgacaactttt 36064068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 349
Target Start/End: Original strand, 36497660 - 36497700
Alignment:
Q  309 agagaaatgatatttgtacaaatattttgtgacaattttta 349  Q
    ||||||||||||||||||||| ||||||||||||| |||||    
T  36497660 agagaaatgatatttgtacaactattttgtgacaactttta 36497700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 382
Target Start/End: Complemental strand, 43873762 - 43873687
Alignment:
Q  310 gagaaatgatatttgtacaaatattttgtgacaattttt--ac-tttctatctctcatactcacattatgttttta 382  Q
    ||||||||||||||||||||  |||||||||||||||||  ||   ||| ||| ||||||||||||||||||||||    
T  43873762 gagaaatgatatttgtacaaccattttgtgacaattttttgacaactctctctttcatactcacattatgttttta 43873687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 418
Target Start/End: Original strand, 26000586 - 26000649
Alignment:
Q  355 tatctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaata 418  Q
    |||||||||||||||| ||||||||||| |||||  ||||||| ||||  |||| |||||||||    
T  26000586 tatctctcatactcacgttatgtttttattttatctctctattgctttgattttcgtgtcaata 26000649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 435
Target Start/End: Complemental strand, 33100489 - 33100413
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaa 435  Q
    ||||||||||||||||||  |||||| ||| |  ||||||| ||||  ||||||||||||||  |||||||||||||||    
T  33100489 tctctcatactcacattacatttttattttct--ctctattactttgatttttgtgtcaatacatacttttctttgtaa 33100413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 431
Target Start/End: Original strand, 38675597 - 38675728
Alignment:
Q  304 acaatagagaaatgatatttgtacaaatattttgtgacaattttta------ctttctatctctcatactcacattatgtttttaatttatacctctatt 397  Q
    ||||||||||||||||||||||||||  |||||   | ||||||||      ||||||  ||||||||| |||||||| |||||| ||| |  |||||||    
T  38675597 acaatagagaaatgatatttgtacaaccatttttctataatttttatgacaactttct--ctctcatacccacattatatttttactttctctctctatt 38675694  T
Q  398 cctttagtttttgtgtcaataactacttttcttt 431  Q
     |||| ||||||||| |||||  |||||||||||    
T  38675695 tctttggtttttgtgccaatacatacttttcttt 38675728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 435
Target Start/End: Original strand, 6440132 - 6440210
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaa 435  Q
    ||||||||||||||||||| |||||| ||| |  || | || ||||  ||||||||||||||  |||||||||||||||    
T  6440132 tctctcatactcacattatatttttactttctctctttcttgctttgatttttgtgtcaatacatacttttctttgtaa 6440210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 437
Target Start/End: Complemental strand, 7331368 - 7331290
Alignment:
Q  359 tctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaagt 437  Q
    ||||||||||| |||||||||||| |||||  || ||||  |||||||||  |||||||| ||| ||||||||| ||||    
T  7331368 tctcatactcatattatgtttttattttatctctatattattttagttttcatgtcaatatctatttttctttgcaagt 7331290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 435
Target Start/End: Complemental strand, 7473046 - 7472969
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaa 435  Q
    ||||||||||||||||||  |||||| |||||  ||||||| |||||||||| |||  |||| ||| ||||||||||||    
T  7473046 tctctcatactcacattac-tttttactttatctctctattgctttagttttcgtgcaaatacctatttttctttgtaa 7472969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 435
Target Start/End: Complemental strand, 10839503 - 10839425
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaa 435  Q
    ||||||||||| |||||||||||||| ||| |   |||||| |||| ||||||||| |||||  || ||||||||||||    
T  10839503 tctctcatacttacattatgtttttactttctctatctattgctttggtttttgtgccaatatttaattttctttgtaa 10839425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 435
Target Start/End: Complemental strand, 25830266 - 25830188
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaa 435  Q
    ||||||||||||||||||| |||||| ||| |  ||||||| ||||  | |||||| |||||  |||||||||||||||    
T  25830266 tctctcatactcacattatatttttactttctctctctattactttgatatttgtgccaatacatacttttctttgtaa 25830188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 343
Target Start/End: Complemental strand, 40413410 - 40413376
Alignment:
Q  309 agagaaatgatatttgtacaaatattttgtgacaa 343  Q
    ||||||||||||||||||||| |||||||||||||    
T  40413410 agagaaatgatatttgtacaattattttgtgacaa 40413376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 347
Target Start/End: Original strand, 43419878 - 43419916
Alignment:
Q  309 agagaaatgatatttgtacaaatattttgtgacaatttt 347  Q
    ||||||||||||||||||||| || ||||||||||||||    
T  43419878 agagaaatgatatttgtacaactaatttgtgacaatttt 43419916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 347
Target Start/End: Original strand, 7010681 - 7010722
Alignment:
Q  306 aatagagaaatgatatttgtacaaatattttgtgacaatttt 347  Q
    ||||||||||||||||||||||||  ||||| ||||||||||    
T  7010681 aatagagaaatgatatttgtacaatcattttttgacaatttt 7010722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 410
Target Start/End: Complemental strand, 12898950 - 12898897
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttg 410  Q
    ||||||||||||||||||| |||||| |||||  ||||||| |||| |||||||    
T  12898950 tctctcatactcacattatctttttactttatctctctattgctttggtttttg 12898897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 349
Target Start/End: Complemental strand, 37562214 - 37562173
Alignment:
Q  308 tagagaaatgatatttgtacaaatattttgtgacaattttta 349  Q
    |||||||||||||||||||||| |||| |||||||| |||||    
T  37562214 tagagaaatgatatttgtacaactattatgtgacaactttta 37562173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 418
Target Start/End: Original strand, 39211092 - 39211153
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaata 418  Q
    ||||||||||||||||| |||||||| ||| |  |||||||  ||| |||||||||||||||    
T  39211092 tctctcatactcacattttgtttttactttttctctctattgttttggtttttgtgtcaata 39211153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 348
Target Start/End: Complemental strand, 8143282 - 8143242
Alignment:
Q  308 tagagaaatgatatttgtacaaatattttgtgacaattttt 348  Q
    ||||||||| |||||||||||| ||||||||||||| ||||    
T  8143282 tagagaaataatatttgtacaactattttgtgacaactttt 8143242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 348
Target Start/End: Complemental strand, 30928004 - 30927964
Alignment:
Q  308 tagagaaatgatatttgtacaaatattttgtgacaattttt 348  Q
    ||||||||||||||||||||||  | |||||||||||||||    
T  30928004 tagagaaatgatatttgtacaaccaatttgtgacaattttt 30927964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 348
Target Start/End: Original strand, 43186298 - 43186334
Alignment:
Q  312 gaaatgatatttgtacaaatattttgtgacaattttt 348  Q
    |||||||||||||||||| |||||||||| |||||||    
T  43186298 gaaatgatatttgtacaattattttgtgataattttt 43186334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 435
Target Start/End: Original strand, 45407129 - 45407205
Alignment:
Q  359 tctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaa 435  Q
    |||||||||||| |||| |||||| ||| | |||||||| |||| ||||  |||||| || ||||||| ||||||||    
T  45407129 tctcatactcacgttatttttttattttctccctctattgctttggtttccgtgtcactatctactttcctttgtaa 45407205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 51)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 355 - 435
Target Start/End: Original strand, 52895276 - 52895357
Alignment:
Q  355 tatctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactac-ttttctttgtaa 435  Q
    ||||||||||| |||||||||||||||| |||||  ||||||| ||||  |||| ||||||||| |||| ||||||||||||    
T  52895276 tatctctcataatcacattatgtttttattttatctctctattgctttgattttcgtgtcaatatctacattttctttgtaa 52895357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 309 - 348
Target Start/End: Complemental strand, 940331 - 940292
Alignment:
Q  309 agagaaatgatatttgtacaaatattttgtgacaattttt 348  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  940331 agagaaatgatatttgtacaactattttgtgacaattttt 940292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 435
Target Start/End: Original strand, 23667929 - 23668007
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaa 435  Q
    |||||||| ||||||||||||||||| ||| |  || ||||  ||||||||| |||||||||||||  |||||||||||    
T  23667929 tctctcatgctcacattatgtttttactttctttctttattattttagttttcgtgtcaataactatgtttctttgtaa 23668007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 435
Target Start/End: Original strand, 37997304 - 37997382
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaa 435  Q
    ||||||||||||||||||| |||||| ||| |  ||||||| ||||  |||||||||||||| ||  ||||||||||||    
T  37997304 tctctcatactcacattatctttttactttctctctctattgctttgatttttgtgtcaatacctcattttctttgtaa 37997382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 306 - 375
Target Start/End: Original strand, 40847366 - 40847438
Alignment:
Q  306 aatagagaaatgatatttgtacaaatattttgtgacaattttta---ctttctatctctcatactcacattat 375  Q
    ||||||||||| |||||||||||| |||||||| ||||||||||   | || | |||||||||||||||||||    
T  40847366 aatagagaaattatatttgtacaattattttgtaacaatttttagaccattttctctctcatactcacattat 40847438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 357 - 434
Target Start/End: Complemental strand, 149505 - 149428
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgta 434  Q
    |||||||||||||||||||||||  | ||| |  ||||||| ||||||||||||||||| || |||  ||||||||||    
T  149505 tctctcatactcacattatgtttcaactttctctctctattgctttagtttttgtgtcactacctaaatttctttgta 149428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 308 - 349
Target Start/End: Original strand, 4914904 - 4914945
Alignment:
Q  308 tagagaaatgatatttgtacaaatattttgtgacaattttta 349  Q
    ||||||||||||||||| |||| |||||||||||||||||||    
T  4914904 tagagaaatgatatttgaacaactattttgtgacaattttta 4914945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 307 - 348
Target Start/End: Original strand, 35017150 - 35017191
Alignment:
Q  307 atagagaaatgatatttgtacaaatattttgtgacaattttt 348  Q
    ||||||||||||||||||||||| ||||||||||||| ||||    
T  35017150 atagagaaatgatatttgtacaactattttgtgacaactttt 35017191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 308 - 349
Target Start/End: Original strand, 47014937 - 47014978
Alignment:
Q  308 tagagaaatgatatttgtacaaatattttgtgacaattttta 349  Q
    |||||||||||||||||||||| ||||||||||||| |||||    
T  47014937 tagagaaatgatatttgtacaactattttgtgacaactttta 47014978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 435
Target Start/End: Complemental strand, 1796004 - 1795924
Alignment:
Q  355 tatctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaa 435  Q
    ||||||||||||||||||||| |||||| |||||  ||||||| ||||  | |||||| |||||  |||||||||| ||||    
T  1796004 tatctctcatactcacattatatttttactttatctctctattactttgatatttgtgccaatacatacttttcttggtaa 1795924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 357 - 432
Target Start/End: Complemental strand, 40693643 - 40693570
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttg 432  Q
    |||||||||||||||||||||||||| ||| |  ||||||| ||||| |||||||| |||||  | ||||||||||    
T  40693643 tctctcatactcacattatgtttttactttct--ctctattgctttaatttttgtgccaatacattcttttctttg 40693570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 306 - 382
Target Start/End: Original strand, 43864030 - 43864108
Alignment:
Q  306 aatagagaaatgatatttgtacaaatattttgtgacaattttt----actttctatctctcatactcacattatgttttta 382  Q
    |||||||||||||||||||||||| |||||||  |||||||||    ||||  | ||||||||||||||||||| ||||||    
T  43864030 aatagagaaatgatatttgtacaactattttggtacaatttttgacaactt--tttctctcatactcacattatattttta 43864108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 375
Target Start/End: Complemental strand, 10994227 - 10994155
Alignment:
Q  306 aatagagaaatgatatttgtacaaatattttgtgacaattttt-----actttctatctctcatactcacattat 375  Q
    ||||||||||||||||||||||||  ||||||||||||| |||     ||||  |||||||||||||||||||||    
T  10994227 aatagagaaatgatatttgtacaaccattttgtgacaatcttttgacaactt--tatctctcatactcacattat 10994155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 435
Target Start/End: Complemental strand, 28458397 - 28458319
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactac-ttttctttgtaa 435  Q
    ||||||||||||||||||| |||||| |||||  ||||||| ||||  |||| ||||||||| |||| ||||||||||||    
T  28458397 tctctcatactcacattat-tttttactttatctctctattgctttgattttcgtgtcaatacctactttttctttgtaa 28458319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 348
Target Start/End: Complemental strand, 38864808 - 38864769
Alignment:
Q  309 agagaaatgatatttgtacaaatattttgtgacaattttt 348  Q
    ||||||||||||||||||||| ||||||||||||| ||||    
T  38864808 agagaaatgatatttgtacaattattttgtgacaactttt 38864769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 435
Target Start/End: Original strand, 41849745 - 41849820
Alignment:
Q  361 tcatactcacattatgtttttaatttatacctctattcctttag-tttttgtgtcaataactacttttctttgtaa 435  Q
    |||||||||||||||||||||| ||| | |||||||| |||| | ||||||||||||||  |  ||||||||||||    
T  41849745 tcatactcacattatgtttttactttcttcctctattgctttggttttttgtgtcaatatttctttttctttgtaa 41849820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 348
Target Start/End: Complemental strand, 43168786 - 43168747
Alignment:
Q  309 agagaaatgatatttgtacaaatattttgtgacaattttt 348  Q
    |||||||||||||||||||||  |||||||||||||||||    
T  43168786 agagaaatgatatttgtacaaccattttgtgacaattttt 43168747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 348
Target Start/End: Complemental strand, 53662500 - 53662461
Alignment:
Q  309 agagaaatgatatttgtacaaatattttgtgacaattttt 348  Q
    ||||||||||||||||||||| |||||||| |||||||||    
T  53662500 agagaaatgatatttgtacaactattttgtaacaattttt 53662461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 435
Target Start/End: Complemental strand, 53801774 - 53801702
Alignment:
Q  361 tcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaa 435  Q
    ||||||||||||||| |||||| ||| |  ||||||| |||||||||||||||||||| ||  ||| ||||||||    
T  53801774 tcatactcacattatctttttactttct--ctctattgctttagtttttgtgtcaatacctcatttcctttgtaa 53801702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 348
Target Start/End: Complemental strand, 9776403 - 9776365
Alignment:
Q  310 gagaaatgatatttgtacaaatattttgtgacaattttt 348  Q
    |||||||||||||||||||| |||||| |||||||||||    
T  9776403 gagaaatgatatttgtacaactattttttgacaattttt 9776365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 308 - 384
Target Start/End: Original strand, 12638823 - 12638902
Alignment:
Q  308 tagagaaatgatatttgtacaaatattttgtgacaattttt-----actttctatctctcatactcacattatgtttttaat 384  Q
    |||||||||||||||||||||| || ||||| |||||||||     ||||||  ||||||||||||||||| | ||||||||    
T  12638823 tagagaaatgatatttgtacaactactttgtaacaatttttagacaactttc--tctctcatactcacattttatttttaat 12638902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 347
Target Start/End: Complemental strand, 18568507 - 18568469
Alignment:
Q  309 agagaaatgatatttgtacaaatattttgtgacaatttt 347  Q
    |||||||||||||||||| || |||||||||||||||||    
T  18568507 agagaaatgatatttgtagaattattttgtgacaatttt 18568469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 447
Target Start/End: Complemental strand, 23369353 - 23369263
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaagtgtttggttgt 447  Q
    |||||| |||||||||||| |||||| |||||  ||||||| |||| ||||||||| || || ||  ||| |||||||||  |||||||||    
T  23369353 tctctcttactcacattatctttttactttatctctctattgctttggtttttgtgccactacctcatttcctttgtaagattttggttgt 23369263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 418
Target Start/End: Original strand, 24045295 - 24045354
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaata 418  Q
    |||||||||||||||||||||||||| ||| |  ||||||| ||||  ||||||||||||||    
T  24045295 tctctcatactcacattatgtttttactttct--ctctattgctttgatttttgtgtcaata 24045354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 435
Target Start/End: Complemental strand, 28417656 - 28417594
Alignment:
Q  373 tatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaa 435  Q
    |||||||||| |||||   |||| | ||||| ||||||||||||||| |||||||||||||||    
T  28417656 tatgtttttactttatctttctactgctttaatttttgtgtcaataattacttttctttgtaa 28417594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 435
Target Start/End: Complemental strand, 31469009 - 31468931
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaa 435  Q
    ||||| || |||||||||| |||||| |||||  ||||||| |||||||||| |||||||||  |  ||||||||||||    
T  31469009 tctcttatgctcacattatatttttactttatttctctattactttagttttcgtgtcaatacatgattttctttgtaa 31468931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 431
Target Start/End: Original strand, 31559589 - 31559663
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttcttt 431  Q
    ||||||||||||||||||| |||||| ||| |  |||||||  ||| ||||| |||| |||| ||||||||||||    
T  31559589 tctctcatactcacattatatttttactttctctctctattgttttggttttcgtgttaatacctacttttcttt 31559663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 343
Target Start/End: Complemental strand, 33093176 - 33093142
Alignment:
Q  309 agagaaatgatatttgtacaaatattttgtgacaa 343  Q
    ||||||||||||||||||||| |||||||||||||    
T  33093176 agagaaatgatatttgtacaactattttgtgacaa 33093142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 349
Target Start/End: Original strand, 33278668 - 33278714
Alignment:
Q  303 tacaatagagaaatgatatttgtacaaatattttgtgacaattttta 349  Q
    ||||| |||||||||||||||| |||| ||||||||||||| |||||    
T  33278668 tacaaaagagaaatgatatttgaacaactattttgtgacaactttta 33278714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 382
Target Start/End: Complemental strand, 35661669 - 35661593
Alignment:
Q  309 agagaaatgatatttgtacaaatattttgtgacaattttta---ctttctatctctcatactcacattatgttttta 382  Q
    |||||||||||||||||||||  ||||| ||||||||||||       || ||||||||||||||||||||||||||    
T  35661669 agagaaatgatatttgtacaaccattttatgacaatttttagacaacactttctctcatactcacattatgttttta 35661593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 415
Target Start/End: Original strand, 37297099 - 37297157
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtca 415  Q
    ||||||||||||||||||| |||||| ||| |  ||||||| |||| ||||||||||||    
T  37297099 tctctcatactcacattatctttttactttctctctctattgctttggtttttgtgtca 37297157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 415
Target Start/End: Original strand, 40348844 - 40348902
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtca 415  Q
    ||||||||||||||||||| |||||| ||| |  ||||||| |||| ||||||||||||    
T  40348844 tctctcatactcacattatctttttactttctctctctattgctttggtttttgtgtca 40348902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 343
Target Start/End: Complemental strand, 41262690 - 41262656
Alignment:
Q  309 agagaaatgatatttgtacaaatattttgtgacaa 343  Q
    ||||||||||||||||||||| |||||||||||||    
T  41262690 agagaaatgatatttgtacaattattttgtgacaa 41262656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 102
Target Start/End: Complemental strand, 44608266 - 44608208
Alignment:
Q  44 gagtctcacacttgagggagagattgttgtgattagcctagtgtgagttaaagtctcac 102  Q
    ||||||||| ||||| |||||||||||||||||  |   ||||||||||||||||||||    
T  44608266 gagtctcacgcttgatggagagattgttgtgatgtgttaagtgtgagttaaagtctcac 44608208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 348
Target Start/End: Complemental strand, 45176806 - 45176768
Alignment:
Q  310 gagaaatgatatttgtacaaatattttgtgacaattttt 348  Q
    |||||||||||||||||||| |||||||| |||||||||    
T  45176806 gagaaatgatatttgtacaattattttgttacaattttt 45176768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 435
Target Start/End: Complemental strand, 50721761 - 50721687
Alignment:
Q  361 tcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaa 435  Q
    ||||||||||||||| |||||| ||| |  ||||| | |||| |||||||||||||| |||  ||||||||||||    
T  50721761 tcatactcacattatatttttactttctctctctactgctttggtttttgtgtcaatcactcattttctttgtaa 50721687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 375
Target Start/End: Complemental strand, 51359864 - 51359800
Alignment:
Q  307 atagagaaatgatatttgtacaaatattttgtgacaatttttactttctatctctcatactcacattat 375  Q
    |||||||||||||||||||||||  |||||||||||| ||||   |||  |||||||||||||||||||    
T  51359864 atagagaaatgatatttgtacaaccattttgtgacaactttt--gttc--tctctcatactcacattat 51359800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 343
Target Start/End: Complemental strand, 2397360 - 2397327
Alignment:
Q  310 gagaaatgatatttgtacaaatattttgtgacaa 343  Q
    ||||||||||||||||||||||||||||| ||||    
T  2397360 gagaaatgatatttgtacaaatattttgtaacaa 2397327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 418
Target Start/End: Original strand, 5249919 - 5249980
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaata 418  Q
    |||||||||||||||||||||||||| ||| |  |||||||  ||| ||||| |||||||||    
T  5249919 tctctcatactcacattatgtttttactttctctctctattgttttggttttcgtgtcaata 5249980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 343
Target Start/End: Complemental strand, 19174834 - 19174801
Alignment:
Q  310 gagaaatgatatttgtacaaatattttgtgacaa 343  Q
    |||||||||||||||||||| |||||||||||||    
T  19174834 gagaaatgatatttgtacaattattttgtgacaa 19174801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 348
Target Start/End: Original strand, 41495010 - 41495051
Alignment:
Q  307 atagagaaatgatatttgtacaaatattttgtgacaattttt 348  Q
    ||||||||||||||||||||||| |||| |||||||| ||||    
T  41495010 atagagaaatgatatttgtacaactattatgtgacaactttt 41495051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 348
Target Start/End: Complemental strand, 12074224 - 12074184
Alignment:
Q  308 tagagaaatgatatttgtacaaatattttgtgacaattttt 348  Q
    ||||||||||||||||||||||  ||||| |||||||||||    
T  12074224 tagagaaatgatatttgtacaaccattttatgacaattttt 12074184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 348
Target Start/End: Complemental strand, 13267551 - 13267511
Alignment:
Q  308 tagagaaatgatatttgtacaaatattttgtgacaattttt 348  Q
    ||||||||||||||||||||||  |||||||||||| ||||    
T  13267551 tagagaaatgatatttgtacaaccattttgtgacaaatttt 13267511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 435
Target Start/End: Complemental strand, 24509410 - 24509330
Alignment:
Q  355 tatctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaa 435  Q
    ||||||||||||||||||||| |||||| ||| |  |||||||  ||| ||||  |||||| || ||| ||||||||||||    
T  24509410 tatctctcatactcacattatttttttactttctctctctattattttggtttccgtgtcactatctatttttctttgtaa 24509330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 435
Target Start/End: Original strand, 26732273 - 26732353
Alignment:
Q  355 tatctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaa 435  Q
    ||||||||||||||||||||| |||||| ||| |  |||||||  ||| ||||||||| || || ||  ||||||||||||    
T  26732273 tatctctcatactcacattatctttttattttctctctctattgttttggtttttgtgccactacctcattttctttgtaa 26732353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 343
Target Start/End: Original strand, 34259812 - 34259848
Alignment:
Q  307 atagagaaatgatatttgtacaaatattttgtgacaa 343  Q
    |||||||||||||||||||||||  ||||||||||||    
T  34259812 atagagaaatgatatttgtacaaccattttgtgacaa 34259848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 411
Target Start/End: Complemental strand, 38510794 - 38510738
Alignment:
Q  355 tatctctcatactcacattatgtttttaatttatacctctattcctttagtttttgt 411  Q
    ||||||||||||||||||||| |||| | ||| |  ||||||| |||||||||||||    
T  38510794 tatctctcatactcacattatcttttaattttctctctctattgctttagtttttgt 38510738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 431
Target Start/End: Original strand, 42853625 - 42853701
Alignment:
Q  355 tatctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttcttt 431  Q
    ||||||| ||||||| |||||||||| | ||| |  ||||||| |||| ||||||||||||||| ||  ||||||||    
T  42853625 tatctcttatactcatattatgttttcactttctctctctattgctttggtttttgtgtcaatacctcattttcttt 42853701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 349
Target Start/End: Original strand, 42853938 - 42853978
Alignment:
Q  309 agagaaatgatatttgtacaaatattttgtgacaattttta 349  Q
    ||||||||||||||||||||| |||||| |||||| |||||    
T  42853938 agagaaatgatatttgtacaactattttttgacaactttta 42853978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 349
Target Start/End: Complemental strand, 44272882 - 44272842
Alignment:
Q  309 agagaaatgatatttgtacaaatattttgtgacaattttta 349  Q
    ||||||||||||||||||||| |||||| |||||| |||||    
T  44272882 agagaaatgatatttgtacaactattttttgacaactttta 44272842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 435
Target Start/End: Original strand, 53796704 - 53796784
Alignment:
Q  355 tatctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaa 435  Q
    ||||||| ||||||||||||| |||||| ||| |  |||||||  ||||||||  |||||| || ||||||| ||||||||    
T  53796704 tatctcttatactcacattatttttttactttctctctctattgttttagtttccgtgtcactatctactttcctttgtaa 53796784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 40)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 359 - 435
Target Start/End: Complemental strand, 41189562 - 41189486
Alignment:
Q  359 tctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaa 435  Q
    ||||||||||||||||| |||||| ||| |  ||||||| |||||||||||||||||||| ||  ||| ||||||||    
T  41189562 tctcatactcacattatctttttactttctctctctattgctttagtttttgtgtcaatacctcatttcctttgtaa 41189486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 357 - 435
Target Start/End: Complemental strand, 22925303 - 22925227
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaa 435  Q
    |||||||||||||||||||||||||||||| |  || |||| ||||| |||||||||||||| ||  ||||| ||||||    
T  22925303 tctctcatactcacattatgtttttaatttct--ctatattgctttaatttttgtgtcaatatcttattttccttgtaa 22925227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 357 - 408
Target Start/End: Original strand, 39029909 - 39029960
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttt 408  Q
    ||||||||||||||||||||||||||||||||  ||||||| |||| |||||    
T  39029909 tctctcatactcacattatgtttttaatttatctctctattactttggtttt 39029960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 308 - 435
Target Start/End: Original strand, 41018661 - 41018792
Alignment:
Q  308 tagagaaatgatatttgtacaaatattttgtgacaattttt------actttctatctctcatactcacattatgtttttaatttatacctctattcctt 401  Q
    ||||||||||||||||| |||| ||||||  ||||| ||||      ||||||||||||  ||||||||||||| |||||| ||| |  ||||||| |||    
T  41018661 tagagaaatgatatttgaacaactatttttggacaacttttgtgacaactttctatctc--atactcacattatatttttactttctctctctattactt 41018758  T
Q  402 tagtttttgtgtcaataactacttttctttgtaa 435  Q
    | |||||||||| |||| ||  ||||||||||||    
T  41018759 tggtttttgtgttaatacctctttttctttgtaa 41018792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 415
Target Start/End: Complemental strand, 24532963 - 24532905
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtca 415  Q
    |||||||||||||||||||||||||| ||| |  ||||||| |||| ||||||||||||    
T  24532963 tctctcatactcacattatgtttttactttctctctctattgctttggtttttgtgtca 24532905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 308 - 349
Target Start/End: Original strand, 9031203 - 9031244
Alignment:
Q  308 tagagaaatgatatttgtacaaatattttgtgacaattttta 349  Q
    ||||||||||||||||||||||| ||||||| ||||||||||    
T  9031203 tagagaaatgatatttgtacaaacattttgttacaattttta 9031244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 359 - 431
Target Start/End: Original strand, 3683584 - 3683656
Alignment:
Q  359 tctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttcttt 431  Q
    ||||||||||||||||| |||||| ||| |  |||||||  |||| |||||||||||||||||  ||||||||    
T  3683584 tctcatactcacattatatttttattttctctctctattgttttaatttttgtgtcaataacttattttcttt 3683656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 418
Target Start/End: Complemental strand, 3937182 - 3937083
Alignment:
Q  309 agagaaatgatatttgtacaaatattttgtgacaatttttactttctatctctcatactcacattatgtttttaatttatacctctattcctttagtttt 408  Q
    |||||||||||||||| |||  |||||||||||||      ||||||  |||||||||||||||||| |||||| |||||  ||||||| |||| |||||    
T  3937182 agagaaatgatatttgaacatctattttgtgacaa------ctttct--ctctcatactcacattatctttttactttat--ctctattactttggtttt 3937093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 435
Target Start/End: Original strand, 35600720 - 35600800
Alignment:
Q  355 tatctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaa 435  Q
    ||||| ||||||||||||||| |||||| ||| |  ||||||| |||| ||||  |||||| || ||||||||||||||||    
T  35600720 tatctttcatactcacattatttttttactttttctctctattactttggtttccgtgtcactatctacttttctttgtaa 35600800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 359 - 431
Target Start/End: Complemental strand, 35628039 - 35627967
Alignment:
Q  359 tctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttcttt 431  Q
    |||||||||||||||||||||||| |||||  |  |||| |||| ||||||||||||||| ||  ||||||||    
T  35628039 tctcatactcacattatgtttttactttatctccttattgctttggtttttgtgtcaatacctctttttcttt 35627967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 435
Target Start/End: Complemental strand, 36352658 - 36352527
Alignment:
Q  310 gagaaatgatatttgtacaaatattttgtgacaattttt------actttctatctctcatactcacattatgtttttaatttatacctctattccttta 403  Q
    |||||||||||| |||||||  ||||||| |||| ||||      ||||||| ||||||||||| ||||||| |||||| |||||  ||||||| ||||     
T  36352658 gagaaatgatatatgtacaaccattttgtaacaacttttgtgacaactttctctctctcatacttacattatatttttactttatctctctattgctttg 36352559  T
Q  404 gtttttgtgtcaataactacttttctttgtaa 435  Q
     |||| |||||||||  |  ||||||||||||    
T  36352558 attttcgtgtcaatatatgattttctttgtaa 36352527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 357 - 421
Target Start/End: Complemental strand, 44189331 - 44189267
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataact 421  Q
    ||||||||||||||||||| |||||| ||| |  ||||||| |||| |||||||||||| |||||    
T  44189331 tctctcatactcacattatctttttactttctctctctattactttggtttttgtgtcactaact 44189267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 435
Target Start/End: Complemental strand, 45815278 - 45815198
Alignment:
Q  355 tatctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaa 435  Q
    ||||||||||||||||||||| |||||| |||||  ||||||| |||| | ||  |||||| || ||||||| ||||||||    
T  45815278 tatctctcatactcacattatttttttactttatttctctattactttgggttccgtgtcactatctactttcctttgtaa 45815198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 348
Target Start/End: Complemental strand, 7458259 - 7458224
Alignment:
Q  313 aaatgatatttgtacaaatattttgtgacaattttt 348  Q
    ||||||||||||||||| ||||||||||||||||||    
T  7458259 aaatgatatttgtacaattattttgtgacaattttt 7458224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 348
Target Start/End: Original strand, 15564910 - 15564949
Alignment:
Q  309 agagaaatgatatttgtacaaatattttgtgacaattttt 348  Q
    ||||||||||||||||||||| ||||||| ||||||||||    
T  15564910 agagaaatgatatttgtacaactattttgcgacaattttt 15564949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 375
Target Start/End: Original strand, 19426576 - 19426648
Alignment:
Q  306 aatagagaaatgatatttgtacaaatattttgtgacaattttt-----actttctatctctcatactcacattat 375  Q
    ||||||||||||||||||||||||  |||||||||||| ||||     ||||||  |||||||||||||||||||    
T  19426576 aatagagaaatgatatttgtacaaccattttgtgacaactttttgacaactttc--tctctcatactcacattat 19426648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 307 - 346
Target Start/End: Original strand, 29355359 - 29355398
Alignment:
Q  307 atagagaaatgatatttgtacaaatattttgtgacaattt 346  Q
    ||||||||||||||| ||||||| ||||||||||||||||    
T  29355359 atagagaaatgatatctgtacaactattttgtgacaattt 29355398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 348
Target Start/End: Complemental strand, 43255639 - 43255600
Alignment:
Q  309 agagaaatgatatttgtacaaatattttgtgacaattttt 348  Q
    |||| |||||||||||||||| ||||||||||||||||||    
T  43255639 agagtaatgatatttgtacaattattttgtgacaattttt 43255600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 349
Target Start/End: Complemental strand, 49167926 - 49167887
Alignment:
Q  310 gagaaatgatatttgtacaaatattttgtgacaattttta 349  Q
    |||||||||||||||||||| |||||||||| ||||||||    
T  49167926 gagaaatgatatttgtacaattattttgtgataattttta 49167887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 435
Target Start/End: Original strand, 4292478 - 4292556
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaa 435  Q
    |||||||||||||||||||||||||| ||| |  ||||||| ||||  |||||||  |||||  || ||||||||||||    
T  4292478 tctctcatactcacattatgtttttactttctctctctattgctttgatttttgtaccaatatttaattttctttgtaa 4292556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 306 - 348
Target Start/End: Complemental strand, 6110053 - 6110011
Alignment:
Q  306 aatagagaaatgatatttgtacaaatattttgtgacaattttt 348  Q
    ||||||||||||||| ||||||||  |||||||||||||||||    
T  6110053 aatagagaaatgataattgtacaaccattttgtgacaattttt 6110011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 435
Target Start/End: Original strand, 28030919 - 28031004
Alignment:
Q  349 actttctatctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaa 435  Q
    |||||||||||| |||| | |||||||||||||| ||| |  ||||||| | ||||||||||||| |||| ||  ||||||||||||    
T  28030919 actttctatctc-catatttacattatgtttttattttttctctctattacattagtttttgtgttaatacctcattttctttgtaa 28031004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 435
Target Start/End: Original strand, 31445372 - 31445446
Alignment:
Q  361 tcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaa 435  Q
    ||||||||||||||| |||||| ||| |  ||||||| ||||  ||||||||||||| |||  ||||||||||||    
T  31445372 tcatactcacattatatttttactttctctctctattgctttgatttttgtgtcaatcactcattttctttgtaa 31445446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 435
Target Start/End: Complemental strand, 40854675 - 40854597
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaa 435  Q
    ||||||||||||||||||| |||||| ||| |  ||||||| ||||  |||||||| ||| |  |||||||||||||||    
T  40854675 tctctcatactcacattatatttttactttctctctctattgctttgatttttgtgccaacacatacttttctttgtaa 40854597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 435
Target Start/End: Complemental strand, 41430172 - 41430094
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaa 435  Q
    ||||| ||||||||||||| |||||| |||||  ||||||| |||| ||||| |||||||||  |  ||||||||||||    
T  41430172 tctcttatactcacattatatttttactttatctctctattgctttggttttcgtgtcaatatatgattttctttgtaa 41430094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 349
Target Start/End: Complemental strand, 34304751 - 34304710
Alignment:
Q  308 tagagaaatgatatttgtacaaatattttgtgacaattttta 349  Q
    |||| ||||||||||||||||| |||||| ||||||||||||    
T  34304751 tagaaaaatgatatttgtacaactattttttgacaattttta 34304710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 343
Target Start/End: Original strand, 37832450 - 37832483
Alignment:
Q  310 gagaaatgatatttgtacaaatattttgtgacaa 343  Q
    |||||||||||||||||||| |||||||||||||    
T  37832450 gagaaatgatatttgtacaactattttgtgacaa 37832483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 416
Target Start/End: Complemental strand, 38340405 - 38340344
Alignment:
Q  355 tatctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaa 416  Q
    |||||||||||||||||||||||||||| ||| |  |||||||  ||| |||||||| ||||    
T  38340405 tatctctcatactcacattatgtttttactttttctctctattgttttggtttttgtctcaa 38340344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 349
Target Start/End: Complemental strand, 40693601 - 40693560
Alignment:
Q  308 tagagaaatgatatttgtacaaatattttgtgacaattttta 349  Q
    |||||||||||||||||||||| |||||| |||||| |||||    
T  40693601 tagagaaatgatatttgtacaactattttttgacaactttta 40693560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 382
Target Start/End: Complemental strand, 41077571 - 41077498
Alignment:
Q  310 gagaaatgatatttgtacaaatattttgtgacaa-tttttactttctatctctcatactcacattatgttttta 382  Q
    |||||||||||||| ||||| || |||||||||| ||||||    || ||| ||||||||||||||||||||||    
T  41077571 gagaaatgatatttttacaactactttgtgacaactttttaagaactctctttcatactcacattatgttttta 41077498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 434
Target Start/End: Original strand, 47448877 - 47448954
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgta 434  Q
    ||||||||||||||||| |||||||| ||| |  ||||||| |||| ||||||||| || || |||  ||||||||||    
T  47448877 tctctcatactcacattgtgtttttactttctttctctattgctttggtttttgtgccactacctaaatttctttgta 47448954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 349
Target Start/End: Original strand, 4971289 - 4971329
Alignment:
Q  309 agagaaatgatatttgtacaaatattttgtgacaattttta 349  Q
    |||||||||||||||||||||  |||||||||||| |||||    
T  4971289 agagaaatgatatttgtacaaccattttgtgacaactttta 4971329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 23041506 - 23041554
Alignment:
Q  49 tcacacttgagggagagattgttgtgattagcctagtgtgagttaaagt 97  Q
    |||||||||||||||||| |||||||||  | | |||||||||||||||    
T  23041506 tcacacttgagggagagaatgttgtgatatgtcaagtgtgagttaaagt 23041554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 343
Target Start/End: Complemental strand, 23680109 - 23680065
Alignment:
Q  299 aatatacaatagagaaatgatatttgtacaaatattttgtgacaa 343  Q
    |||| ||| |||| ||||||||||||||||| |||||||||||||    
T  23680109 aataaacattagaaaaatgatatttgtacaactattttgtgacaa 23680065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 343
Target Start/End: Complemental strand, 24044806 - 24044774
Alignment:
Q  311 agaaatgatatttgtacaaatattttgtgacaa 343  Q
    ||||||||||||||||||| |||||||||||||    
T  24044806 agaaatgatatttgtacaattattttgtgacaa 24044774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 349
Target Start/End: Complemental strand, 25940704 - 25940664
Alignment:
Q  309 agagaaatgatatttgtacaaatattttgtgacaattttta 349  Q
    |||||||||||||||||||||  ||||||| ||||||||||    
T  25940704 agagaaatgatatttgtacaaccattttgtaacaattttta 25940664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 435
Target Start/End: Original strand, 33776408 - 33776488
Alignment:
Q  355 tatctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaa 435  Q
    ||||||||||||||||||||| |||| | ||| |  ||||||| |||| ||||| |||||| || ||| ||| ||||||||    
T  33776408 tatctctcatactcacattattttttaactttctctctctattactttggttttcgtgtcactatctattttcctttgtaa 33776488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 407
Target Start/End: Complemental strand, 36703894 - 36703842
Alignment:
Q  355 tatctctcatactcacattatgtttttaatttatacctctattcctttagttt 407  Q
    ||||||||||||||||||||| |||||| ||| |  ||||||| |||||||||    
T  36703894 tatctctcatactcacattatttttttactttctctctctattgctttagttt 36703842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 347
Target Start/End: Complemental strand, 38218410 - 38218374
Alignment:
Q  311 agaaatgatatttgtacaaatattttgtgacaatttt 347  Q
    |||||||||||||||||||  ||||||||||||||||    
T  38218410 agaaatgatatttgtacaatcattttgtgacaatttt 38218374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 349
Target Start/End: Original strand, 40077253 - 40077293
Alignment:
Q  309 agagaaatgatatttgtacaaatattttgtgacaattttta 349  Q
    |||||||| |||||||||||| |||||||| ||||||||||    
T  40077253 agagaaattatatttgtacaactattttgtaacaattttta 40077293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 43)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 435
Target Start/End: Complemental strand, 52564706 - 52564592
Alignment:
Q  309 agagaaatgatatttgtacaaatattttgtgacaatttttactttctatctctcatactcacattatgtttttaatttatacctctattcctttagtttt 408  Q
    |||||||||||||||||||||  ||||||||||||||||          ||||||||||||||||||||||||| ||  |  ||| ||| |||| |||||    
T  52564706 agagaaatgatatttgtacaaccattttgtgacaatttt----------ctctcatactcacattatgtttttacttctt--ctccattgctttggtttt 52564619  T
Q  409 tgtgtcaataactacttttctttgtaa 435  Q
     ||| ||||| ||||||||||||||||    
T  52564618 agtgccaatacctacttttctttgtaa 52564592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 355 - 418
Target Start/End: Original strand, 28700509 - 28700572
Alignment:
Q  355 tatctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaata 418  Q
    |||||||||||||||||||||||||||| ||| |  ||||||| |||| ||||||||| |||||    
T  28700509 tatctctcatactcacattatgtttttactttctctctctattgctttggtttttgtgccaata 28700572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 418
Target Start/End: Complemental strand, 6178496 - 6178385
Alignment:
Q  310 gagaaatgatatttgtacaaatattttgtgacaattttt---act-ttctatctctcatactcacattatgtttttaatttatacctctattcctttagt 405  Q
    |||||||||||||||||||| |||||| |||||| ||||   ||  || | |||||||||||||||||||||||||| ||| |  ||||||| ||||  |    
T  6178496 gagaaatgatatttgtacaactatttt-tgacaacttttgtgacaattttctctctcatactcacattatgtttttactttctctctctattgctttgat 6178398  T
Q  406 ttttgtgtcaata 418  Q
    |||||||||||||    
T  6178397 ttttgtgtcaata 6178385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 435
Target Start/End: Complemental strand, 44813468 - 44813390
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaa 435  Q
    ||||||||||||||||||| |||||| |||||  ||||||| |||| ||||| |||||||||  |  ||||||||||||    
T  44813468 tctctcatactcacattatatttttactttatctctctattgctttggttttcgtgtcaatacatggttttctttgtaa 44813390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 348
Target Start/End: Original strand, 45205288 - 45205326
Alignment:
Q  310 gagaaatgatatttgtacaaatattttgtgacaattttt 348  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  45205288 gagaaatgatatttgtacaactattttgtgacaattttt 45205326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 435
Target Start/End: Original strand, 52485527 - 52485601
Alignment:
Q  361 tcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaa 435  Q
    ||||||||||||||| |||||| |||||  ||||||| |||| ||||| ||| |||||  |||||||||||||||    
T  52485527 tcatactcacattatatttttactttatctctctattgctttggttttcgtgccaatacatacttttctttgtaa 52485601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 355 - 432
Target Start/End: Complemental strand, 6093901 - 6093824
Alignment:
Q  355 tatctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttg 432  Q
    |||||||||||||| |||||| |||||| ||| |  ||||||| |||| |||| ||||| |||||| |||||||||||    
T  6093901 tatctctcatactcgcattatctttttactttctctctctattgctttggtttctgtgttaataaccacttttctttg 6093824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 359 - 435
Target Start/End: Complemental strand, 32587814 - 32587740
Alignment:
Q  359 tctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaa 435  Q
    |||||||||||||||||||||||||||| |  ||||||| |||| ||||||||| |||||  |  ||||||||||||    
T  32587814 tctcatactcacattatgtttttaatttct--ctctattgctttggtttttgtgccaatatttcattttctttgtaa 32587740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 301 - 435
Target Start/End: Complemental strand, 37035594 - 37035468
Alignment:
Q  301 tatacaatagagaaatgatatttgtacaaatattttgtgacaatttttactttctatctctcatactcacattatgtttttaatttatacctctattcct 400  Q
    ||||||| |||||||||||||||  ||||  ||||||||||||||||        || | ||||||||||||||| |||||| |||||  ||||||| ||    
T  37035594 tatacaaaagagaaatgatattttgacaaccattttgtgacaatttt--------atttttcatactcacattatttttttactttatctctctattact 37035503  T
Q  401 ttagtttttgtgtcaataactacttttctttgtaa 435  Q
    || ||||  |||||| || ||||||| ||||||||    
T  37035502 ttggtttccgtgtcactatctactttcctttgtaa 37035468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 357 - 418
Target Start/End: Complemental strand, 42358659 - 42358598
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaata 418  Q
    ||||||||||||||||||| |||||| |||||  ||||||| ||||  ||||||||||||||    
T  42358659 tctctcatactcacattatctttttactttatctctctattgctttgatttttgtgtcaata 42358598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 357 - 418
Target Start/End: Original strand, 50314675 - 50314736
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaata 418  Q
    |||||||||||||||||||||||||| ||| |  ||||||| ||||  ||||||||||||||    
T  50314675 tctctcatactcacattatgtttttactttctctctctattactttgatttttgtgtcaata 50314736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 349
Target Start/End: Complemental strand, 7867783 - 7867743
Alignment:
Q  309 agagaaatgatatttgtacaaatattttgtgacaattttta 349  Q
    ||||||||||||||||||||| ||||||||||||| |||||    
T  7867783 agagaaatgatatttgtacaactattttgtgacaactttta 7867743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 349
Target Start/End: Complemental strand, 35376623 - 35376583
Alignment:
Q  309 agagaaatgatatttgtacaaatattttgtgacaattttta 349  Q
    |||||||||||||||||||||  ||||||||||||||||||    
T  35376623 agagaaatgatatttgtacaaccattttgtgacaattttta 35376583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 399 - 435
Target Start/End: Complemental strand, 46965897 - 46965861
Alignment:
Q  399 ctttagtttttgtgtcaataactacttttctttgtaa 435  Q
    |||||||||||||||||||| ||||||||||||||||    
T  46965897 ctttagtttttgtgtcaatacctacttttctttgtaa 46965861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 399 - 435
Target Start/End: Complemental strand, 46965988 - 46965952
Alignment:
Q  399 ctttagtttttgtgtcaataactacttttctttgtaa 435  Q
    |||||||||||||||||||| ||||||||||||||||    
T  46965988 ctttagtttttgtgtcaatacctacttttctttgtaa 46965952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 228
Target Start/End: Original strand, 40056616 - 40056686
Alignment:
Q  158 aatgacttaaagtttgtggtgatgatgtggtgtttaaaatcacttgtgtggtttc-tttaatctaatgtgat 228  Q
    |||||||||| |||| |||||| ||||||||||  ||| |||||||||||||||| |||||||||| |||||    
T  40056616 aatgacttaaggtttatggtgaagatgtggtgtc-aaactcacttgtgtggtttcttttaatctaacgtgat 40056686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 435
Target Start/End: Complemental strand, 44413941 - 44413865
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaa 435  Q
    ||||||||||||||||||| ||||||  || |  ||||||| |||| ||||||||||||||| ||  ||||||||||||    
T  44413941 tctctcatactcacattatctttttaccttct--ctctattgctttggtttttgtgtcaatatctcattttctttgtaa 44413865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 349
Target Start/End: Original strand, 51873393 - 51873432
Alignment:
Q  310 gagaaatgatatttgtacaaatattttgtgacaattttta 349  Q
    ||||||||||||||| |||| |||||||||||||||||||    
T  51873393 gagaaatgatatttgaacaactattttgtgacaattttta 51873432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 348
Target Start/End: Complemental strand, 53932463 - 53932424
Alignment:
Q  309 agagaaatgatatttgtacaaatattttgtgacaattttt 348  Q
    |||||||||||||||||||||  |||||||||||||||||    
T  53932463 agagaaatgatatttgtacaaccattttgtgacaattttt 53932424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 431
Target Start/End: Original strand, 54007514 - 54007586
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttcttt 431  Q
    ||||||||||||||||| | |||||| |||||  |||||||| |||  |||||||||||||| ||| ||||||||    
T  54007514 tctctcatactcacattttatttttattttat--ctctattctttttatttttgtgtcaatatctatttttcttt 54007586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 415
Target Start/End: Original strand, 288776 - 288834
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtca 415  Q
    ||||||||||||||||||| |||||| ||| |  ||||||| |||| ||||||||||||    
T  288776 tctctcatactcacattatttttttactttctctctctattgctttggtttttgtgtca 288834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 349
Target Start/End: Original strand, 12792631 - 12792677
Alignment:
Q  303 tacaatagagaaatgatatttgtacaaatattttgtgacaattttta 349  Q
    ||||| |||||||||||||||||||||  | ||||||||||||||||    
T  12792631 tacaaaagagaaatgatatttgtacaaccactttgtgacaattttta 12792677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 348
Target Start/End: Complemental strand, 37134677 - 37134639
Alignment:
Q  310 gagaaatgatatttgtacaaatattttgtgacaattttt 348  Q
    |||||||||||||||||||| |||||| |||||||||||    
T  37134677 gagaaatgatatttgtacaactattttatgacaattttt 37134639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 415
Target Start/End: Original strand, 38926678 - 38926736
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtca 415  Q
    ||||||||||||||||||| |||||| ||| |  ||||||| |||| ||||||||||||    
T  38926678 tctctcatactcacattatctttttactttctctctctattgctttggtttttgtgtca 38926736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 306 - 348
Target Start/End: Complemental strand, 38944216 - 38944174
Alignment:
Q  306 aatagagaaatgatatttgtacaaatattttgtgacaattttt 348  Q
    |||||||||||||||||||||||| || |||||||||| ||||    
T  38944216 aatagagaaatgatatttgtacaactaatttgtgacaactttt 38944174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 431
Target Start/End: Complemental strand, 39629859 - 39629785
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttcttt 431  Q
    |||||||||||||||||||||||||| ||| |  |||||||  |||  ||||| ||||||||| | |||||||||    
T  39629859 tctctcatactcacattatgtttttactttctctctctattgttttgatttttatgtcaataatttcttttcttt 39629785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 415
Target Start/End: Original strand, 41505541 - 41505599
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtca 415  Q
    ||||||||||||||||||| |||||| ||| |  ||||||| |||| ||||||||||||    
T  41505541 tctctcatactcacattatctttttactttctctctctattgctttggtttttgtgtca 41505599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 427
Target Start/End: Original strand, 49761358 - 49761427
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactactttt 427  Q
    ||||||||||||||||||| |||||| |||||  ||||||| |||| |||||||||  |||| ||||||||    
T  49761358 tctctcatactcacattat-tttttactttatctctctattgctttggtttttgtgcaaatacctactttt 49761427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 431
Target Start/End: Original strand, 51982153 - 51982223
Alignment:
Q  361 tcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttcttt 431  Q
    ||||||| | |||||||||||| ||| |  ||||||| |||||||||||||||||||| ||  ||||||||    
T  51982153 tcatacttatattatgtttttactttctctctctattgctttagtttttgtgtcaataccttattttcttt 51982223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 435
Target Start/End: Complemental strand, 52963336 - 52963258
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaa 435  Q
    ||||||||| ||| ||||| |||||| ||| |   |||||| ||||||||||||||||||||  || ||||||||||||    
T  52963336 tctctcatattcatattatatttttactttctttttctattactttagtttttgtgtcaatacatatttttctttgtaa 52963258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 435
Target Start/End: Complemental strand, 55361254 - 55361176
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaa 435  Q
    ||||| ||||||||||||| |||||| ||| |  ||||||| |||| |||||||||||||||  |  ||||||||||||    
T  55361254 tctcttatactcacattatttttttactttctctctctattgctttggtttttgtgtcaatacttcattttctttgtaa 55361176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 348
Target Start/End: Original strand, 5398907 - 5398956
Alignment:
Q  299 aatatacaatagagaaatgatatttgtacaaatattttgtgacaattttt 348  Q
    |||||| || |||||||||||||||||||||  | |||||||||||||||    
T  5398907 aatataaaaaagagaaatgatatttgtacaaccactttgtgacaattttt 5398956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 434
Target Start/End: Original strand, 34456841 - 34456918
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgta 434  Q
    ||||||||||||| ||||| |||||| ||| |  ||||||| ||||| |||||||| ||||| |||  ||||||||||    
T  34456841 tctctcatactcatattatctttttactttctctctctattgctttaatttttgtgccaatacctaaatttctttgta 34456918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 349
Target Start/End: Complemental strand, 34607993 - 34607952
Alignment:
Q  308 tagagaaatgatatttgtacaaatattttgtgacaattttta 349  Q
    ||||||||||||||||||||||  | ||||||||||||||||    
T  34607993 tagagaaatgatatttgtacaaccactttgtgacaattttta 34607952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 349
Target Start/End: Original strand, 41717261 - 41717302
Alignment:
Q  308 tagagaaatgatatttgtacaaatattttgtgacaattttta 349  Q
    |||||||||||||||||||||| ||||| ||||||| |||||    
T  41717261 tagagaaatgatatttgtacaattatttagtgacaactttta 41717302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 143
Target Start/End: Complemental strand, 2517492 - 2517416
Alignment:
Q  67 ttgttgtgattagcctagtgtgagttaaagtctcacgttggatggaaaatatgaggttgagcaacatataagcaaga 143  Q
    ||||||||||  | ||| |||||||||||||| ||| ||| ||| || |  | ||||||||||||||||||||||||    
T  2517492 ttgttgtgataggtctaatgtgagttaaagtcccacattgaatgaaagagttaaggttgagcaacatataagcaaga 2517416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 435
Target Start/End: Complemental strand, 12762708 - 12762632
Alignment:
Q  359 tctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaa 435  Q
    |||||| |||||| ||| |||||| ||| |  || |||| ||||  |||||||||||||||||| ||||||||||||    
T  12762708 tctcattctcacaatatatttttattttctctctttattactttgatttttgtgtcaataactatttttctttgtaa 12762632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 349
Target Start/End: Original strand, 20215947 - 20215987
Alignment:
Q  309 agagaaatgatatttgtacaaatattttgtgacaattttta 349  Q
    |||||||||||||||||||||  | ||||||||||||||||    
T  20215947 agagaaatgatatttgtacaaccactttgtgacaattttta 20215987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 348
Target Start/End: Original strand, 29705901 - 29705941
Alignment:
Q  308 tagagaaatgatatttgtacaaatattttgtgacaattttt 348  Q
    |||||||||||||||| ||||| |||||||||| |||||||    
T  29705901 tagagaaatgatatttatacaattattttgtgataattttt 29705941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 349
Target Start/End: Complemental strand, 29800621 - 29800581
Alignment:
Q  309 agagaaatgatatttgtacaaatattttgtgacaattttta 349  Q
    ||||||||||||||||||||| || ||||||| ||||||||    
T  29800621 agagaaatgatatttgtacaactactttgtgataattttta 29800581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 348
Target Start/End: Complemental strand, 30633889 - 30633849
Alignment:
Q  308 tagagaaatgatatttgtacaaatattttgtgacaattttt 348  Q
    ||||||||||||||||||||||  ||||||||||| |||||    
T  30633889 tagagaaatgatatttgtacaacaattttgtgacatttttt 30633849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 349
Target Start/End: Complemental strand, 45529014 - 45528974
Alignment:
Q  309 agagaaatgatatttgtacaaatattttgtgacaattttta 349  Q
    ||||||||||||||||||||| |||||| |||||| |||||    
T  45529014 agagaaatgatatttgtacaactattttttgacaactttta 45528974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 347
Target Start/End: Original strand, 50146485 - 50146525
Alignment:
Q  307 atagagaaatgatatttgtacaaatattttgtgacaatttt 347  Q
    |||||||||||||||||||| ||  ||||||||||||||||    
T  50146485 atagagaaatgatatttgtataatcattttgtgacaatttt 50146525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 301 - 349
Target Start/End: Original strand, 10288141 - 10288189
Alignment:
Q  301 tatacaatagagaaatgatatttgtacaaatattttgtgacaattttta 349  Q
    |||| |||||||||||||||||||||||| |||||||||| ||||||||    
T  10288141 tataaaatagagaaatgatatttgtacaactattttgtgataattttta 10288189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 435
Target Start/End: Original strand, 1352443 - 1352517
Alignment:
Q  361 tcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaa 435  Q
    ||||||||||||||| |||||| |||||  ||||||| |||| ||||||||| |||| |||  ||||||||||||    
T  1352443 tcatactcacattatatttttactttatttctctattgctttggtttttgtgccaatcactcattttctttgtaa 1352517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 435
Target Start/End: Complemental strand, 4138206 - 4138129
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaa 435  Q
    |||||||||||||||||||  ||||| ||| |  ||||||| |||||||||| ||| |||||| |||||||||||||||    
T  4138206 tctctcatactcacattataattttactttctgtctctattactttagttttggtgccaataa-tacttttctttgtaa 4138129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 435
Target Start/End: Original strand, 42430700 - 42430778
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaa 435  Q
    |||||||||||||||||||||||||| ||  |  |||||||  ||| ||||  ||||||||| ||||||||||||||||    
T  42430700 tctctcatactcacattatgtttttacttcctctctctattgttttggtttccgtgtcaatacctacttttctttgtaa 42430778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 347
Target Start/End: Complemental strand, 42607591 - 42607553
Alignment:
Q  309 agagaaatgatatttgtacaaatattttgtgacaatttt 347  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  42607591 agagaaatgatatttgtacaattattttgtgacaatttt 42607553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 357 - 418
Target Start/End: Original strand, 2144770 - 2144831
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaata 418  Q
    |||| |||||||||||| ||||||||||||||  ||||||| |||| ||||||||| |||||    
T  2144770 tctcccatactcacattttgtttttaatttatctctctattgctttggtttttgtgccaata 2144831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 355 - 408
Target Start/End: Complemental strand, 39213792 - 39213740
Alignment:
Q  355 tatctctcatactcacattatgtttttaatttatacctctattcctttagtttt 408  Q
    ||||||||||||||||||||| |||||| |||||  ||||||||||||||||||    
T  39213792 tatctctcatactcacattat-tttttactttatctctctattcctttagtttt 39213740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 308 - 348
Target Start/End: Original strand, 36383460 - 36383500
Alignment:
Q  308 tagagaaatgatatttgtacaaatattttgtgacaattttt 348  Q
    ||||||||||||||||||||||| |||||||||||| ||||    
T  36383460 tagagaaatgatatttgtacaaagattttgtgacaactttt 36383500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 349
Target Start/End: Original strand, 10687937 - 10687980
Alignment:
Q  306 aatagagaaatgatatttgtacaaatattttgtgacaattttta 349  Q
    ||||||||||||||||||||||||| | |||||||||| |||||    
T  10687937 aatagagaaatgatatttgtacaaacaatttgtgacaactttta 10687980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 348
Target Start/End: Original strand, 18531600 - 18531639
Alignment:
Q  309 agagaaatgatatttgtacaaatattttgtgacaattttt 348  Q
    ||||||||||||||||||||| |||||| |||||||||||    
T  18531600 agagaaatgatatttgtacaactattttttgacaattttt 18531639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 348
Target Start/End: Complemental strand, 38290744 - 38290701
Alignment:
Q  306 aatagagaaatgatatttgtacaaa-tattttgtgacaattttt 348  Q
    |||||||||| |||||||||||||| ||||||||||||||||||    
T  38290744 aatagagaaaagatatttgtacaaactattttgtgacaattttt 38290701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 347
Target Start/End: Original strand, 12358309 - 12358351
Alignment:
Q  305 caatagagaaatgatatttgtacaaatattttgtgacaatttt 347  Q
    ||||||||||||||||| |||||||  ||||||||||||||||    
T  12358309 caatagagaaatgatatatgtacaatcattttgtgacaatttt 12358351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 435
Target Start/End: Original strand, 28245779 - 28245856
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaa 435  Q
    ||||||||||||||||||| |||||| |||||  ||||||| |||| ||||| |||  |||| ||| ||||||||||||    
T  28245779 tctctcatactcacattat-tttttactttatctctctattgctttggttttcgtgcaaatacctatttttctttgtaa 28245856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 347
Target Start/End: Complemental strand, 35171298 - 35171260
Alignment:
Q  309 agagaaatgatatttgtacaaatattttgtgacaatttt 347  Q
    |||||||||||||||||||||  ||||||||||||||||    
T  35171298 agagaaatgatatttgtacaaccattttgtgacaatttt 35171260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 435
Target Start/End: Original strand, 41195634 - 41195712
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaa 435  Q
    ||||||||||||||||||  |||||| ||| |  ||||||| |||| ||||||||||||||| ||  ||| ||||||||    
T  41195634 tctctcatactcacattacctttttactttctctctctattgctttggtttttgtgtcaatatctcatttcctttgtaa 41195712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 435
Target Start/End: Complemental strand, 44977520 - 44977442
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaa 435  Q
    ||||||||| | |||||||||||||| ||| |  ||||||| |||| ||||||||||||||| |   ||||||||||||    
T  44977520 tctctcatatttacattatgtttttactttctctctctattgctttggtttttgtgtcaataccccattttctttgtaa 44977442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 343
Target Start/End: Complemental strand, 22353239 - 22353202
Alignment:
Q  306 aatagagaaatgatatttgtacaaatattttgtgacaa 343  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  22353239 aatagagaaatgatatttgtacaatcattttgtgacaa 22353202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 434
Target Start/End: Original strand, 31578485 - 31578562
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgta 434  Q
    |||||||||||||||||||  ||||| |||||  ||||||| ||||  ||||||||||| || |||  ||||||||||    
T  31578485 tctctcatactcacattattcttttactttatctctctattgctttgatttttgtgtcactacctaaatttctttgta 31578562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 418
Target Start/End: Original strand, 34215315 - 34215376
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaata 418  Q
    ||||||||| |||||||||||||||| ||| |   |||||| || |||||||||||||||||    
T  34215315 tctctcatattcacattatgtttttactttttctttctattgctatagtttttgtgtcaata 34215376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 348
Target Start/End: Complemental strand, 36909917 - 36909876
Alignment:
Q  307 atagagaaatgatatttgtacaaatattttgtgacaattttt 348  Q
    |||||||||||||||||||||||  |||||||||||| ||||    
T  36909917 atagagaaatgatatttgtacaaccattttgtgacaactttt 36909876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 418
Target Start/End: Original strand, 40700246 - 40700307
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaata 418  Q
    ||||||||||||||||||| |||||| |||||  ||||||| ||||  |||| |||||||||    
T  40700246 tctctcatactcacattatatttttactttatctctctattactttgattttcgtgtcaata 40700307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 418
Target Start/End: Original strand, 41042304 - 41042365
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaata 418  Q
    ||||||||||||||||||| |||||| ||| |  ||||||| |||| |||||| ||||||||    
T  41042304 tctctcatactcacattatctttttactttctctctctattgctttggtttttatgtcaata 41042365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 402
Target Start/End: Original strand, 42372530 - 42372575
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattccttt 402  Q
    ||||||||||||||||||| |||||| |||||  ||||||||||||    
T  42372530 tctctcatactcacattatttttttactttatctctctattccttt 42372575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 348
Target Start/End: Original strand, 6365184 - 6365224
Alignment:
Q  308 tagagaaatgatatttgtacaaatattttgtgacaattttt 348  Q
    ||||||||||||||||||||||  | |||||||||||||||    
T  6365184 tagagaaatgatatttgtacaaccactttgtgacaattttt 6365224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 435
Target Start/End: Complemental strand, 13711389 - 13711309
Alignment:
Q  355 tatctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaa 435  Q
    ||||||||||| ||||||||| |||||| ||| |  ||||||| |||| ||||  |||||| || ||||||| ||||||||    
T  13711389 tatctctcatattcacattatttttttactttctctctctattactttggtttccgtgtcactatctactttcctttgtaa 13711309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 340
Target Start/End: Complemental strand, 14891151 - 14891119
Alignment:
Q  308 tagagaaatgatatttgtacaaatattttgtga 340  Q
    |||||||||||||||||||||| ||||||||||    
T  14891151 tagagaaatgatatttgtacaactattttgtga 14891119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 349
Target Start/End: Complemental strand, 15283322 - 15283282
Alignment:
Q  309 agagaaatgatatttgtacaaatattttgtgacaattttta 349  Q
    |||||||||||||||||||||  | ||||||||||||||||    
T  15283322 agagaaatgatatttgtacaaccactttgtgacaattttta 15283282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 349
Target Start/End: Original strand, 23391071 - 23391111
Alignment:
Q  309 agagaaatgatatttgtacaaatattttgtgacaattttta 349  Q
    ||||||||||||||||||||| || ||||||| ||||||||    
T  23391071 agagaaatgatatttgtacaattaatttgtgataattttta 23391111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 349
Target Start/End: Original strand, 27939160 - 27939196
Alignment:
Q  313 aaatgatatttgtacaaatattttgtgacaattttta 349  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  27939160 aaatgatatttatacaactattttgtgacaattttta 27939196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 348
Target Start/End: Complemental strand, 44484729 - 44484689
Alignment:
Q  308 tagagaaatgatatttgtacaaatattttgtgacaattttt 348  Q
    ||||||||||||||||||||||  ||||||| |||||||||    
T  44484729 tagagaaatgatatttgtacaaccattttgtaacaattttt 44484689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 447
Target Start/End: Complemental strand, 53378 - 53292
Alignment:
Q  361 tcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaagtgtttggttgt 447  Q
    |||||||||||||||||||||| ||| |  |||| ||  ||||||||||||||||||| ||  |||||||| ||| | |||||||||    
T  53378 tcatactcacattatgtttttattttctctctcttttgttttagtttttgtgtcaatatctcattttctttataaatttttggttgt 53292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0662 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 308 - 349
Target Start/End: Original strand, 1076 - 1117
Alignment:
Q  308 tagagaaatgatatttgtacaaatattttgtgacaattttta 349  Q
    |||||||||||||||||||||| ||||||||||||| |||||    
T  1076 tagagaaatgatatttgtacaactattttgtgacaactttta 1117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 349
Target Start/End: Complemental strand, 19767 - 19723
Alignment:
Q  305 caatagagaaatgatatttgtacaaatattttgtgacaattttta 349  Q
    |||| |||||||||||||||||||| ||||||||||||| |||||    
T  19767 caatggagaaatgatatttgtacaactattttgtgacaactttta 19723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 435
Target Start/End: Original strand, 90010 - 90086
Alignment:
Q  357 tctctcatactcacattatgtttttaatttatacctctattcctttagtttttgtgtcaataactacttttctttgtaa 435  Q
    ||||||||||||| || ||||||||| ||| |  |||||||||||| |||||| ||||||||  || ||||||||||||    
T  90010 tctctcatactcatatcatgtttttacttttt--ctctattcctttggtttttatgtcaatacttaattttctttgtaa 90086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 349
Target Start/End: Original strand, 17434 - 17475
Alignment:
Q  308 tagagaaatgatatttgtacaaatattttgtgacaattttta 349  Q
    ||||||||||||||||||||||  ||||||| ||||||||||    
T  17434 tagagaaatgatatttgtacaaccattttgtcacaattttta 17475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University