View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21100_high_15 (Length: 411)
Name: NF21100_high_15
Description: NF21100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21100_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 11 - 396
Target Start/End: Complemental strand, 39215209 - 39214824
Alignment:
| Q |
11 |
cataggcatatgataaaatgaacactgcagaacatgtttgtggtagaaaatgagttctacatgacaagatgcattttggggaaattgattttgaacaaac |
110 |
Q |
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| T |
39215209 |
cataagcatatgataaaatgaacactgcagaacatgtttgtggtagaaaatgagttctacatgacaagatgcattttggggaaattgattttgaacaaac |
39215110 |
T |
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| Q |
111 |
ttcataggaagtgtttgctctagaattagcaaggcaaacttcaatataaagaaagtgttacatataggaagctnnnnnnntcttatgaattggaccacat |
210 |
Q |
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| T |
39215109 |
ttcataggaagtgtttgctctagaattagcaaggcaaacttcaatataaagaaagtgttacatataggaagctaaaataatcttatgaattggaccacat |
39215010 |
T |
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| Q |
211 |
tnnnnnnnttgagcatgccacaaaacagctctcaagcctttcaagtttcaaccgtcaaaccagaagtatggagaccaaatagatgctcccaaggctttta |
310 |
Q |
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| T |
39215009 |
taaaaaaattgagcatgccacaaaacagctctcaagcctttcaagtttcaaccgtcaaaccagaagtatggagaccaaatagatgctcccaaggctttta |
39214910 |
T |
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| Q |
311 |
gagtacaataagtgctagaaggaatgttttccaaaactggaccagagattgaacaagtgagactttcgggccatggttcaattagt |
396 |
Q |
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| T |
39214909 |
gagtacaataagtgctagaaggaatgttttccaaaactggaccagagattgaacaagtgagactttcgggccatggttcaattagt |
39214824 |
T |
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