View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21100_high_17 (Length: 401)
Name: NF21100_high_17
Description: NF21100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21100_high_17 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 15 - 383
Target Start/End: Original strand, 39933987 - 39934355
Alignment:
| Q |
15 |
agcacagatgcaatgtatgtcacaaataatctacatcaagaaactgaatttaggaactagattgagagaaaggtactgaagaaattaatgacaatttatg |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39933987 |
agcacagatgcaatgtatgtcacaaataatctacatccagaaactgaatttaggaactagattgagagaaaggtactgaagaaattaatgacaatttatg |
39934086 |
T |
|
| Q |
115 |
atttctcatctaagtgaaaatgtgacatcatacatgtatttatagctacatagatgtgtaacagtactctaactaactttctacattggtttactaactg |
214 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39934087 |
atttctcatctaagtgacaatgtgacatcatacatgtatttatagctacatagatgtgtaacagtactctaactaactttctacattggtttactaactg |
39934186 |
T |
|
| Q |
215 |
taactaattacaacacgctaactagcctcatcaatgtttgttagatcagtaacttgttgtgcaagtcactaagaattgctacatatcttgacagtctttt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39934187 |
taactaattacaacacgctaactagcctcatcaatgtttgttagatcagtaacttgttgtgcaagtcactaagaattgctacatatcttgacagtctttt |
39934286 |
T |
|
| Q |
315 |
tcatagaatgtaggagagaagaacttatcatcattatcacttattccaaccataacaatatcatttatc |
383 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39934287 |
tcatagaatgtaggagagaagaacgtatcatcattatcacttattccaaccataacaatatcatttatc |
39934355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 351
Target Start/End: Original strand, 39928648 - 39928688
Alignment:
| Q |
311 |
tttttcatagaatgtaggagagaagaacttatcatcattat |
351 |
Q |
| |
|
||||||||||||||||||||| |||||||||| | |||||| |
|
|
| T |
39928648 |
tttttcatagaatgtaggagaaaagaacttattaccattat |
39928688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University