View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21100_high_18 (Length: 396)
Name: NF21100_high_18
Description: NF21100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21100_high_18 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 31264086 - 31264463
Alignment:
| Q |
1 |
aatatttgagggtttgattgagatgaagtcataacattgagatccataaatataaattattacttatcggataaattaccatctttccaatattacggag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
31264086 |
aatatttgagggtttgattgagatgaagtcataacattgagatccataaatataaattattactcatcggataaattaccatctttccaatattacggag |
31264185 |
T |
|
| Q |
101 |
atgctctattccatgtctttcaactttctttgaattcagacttctgttgagacaaatttgcatctgagtgttcttgtcacgtatgatattaacgactagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
31264186 |
atgctctattccatgtctttcaactttccttgaattcagacttctgttgcgacaaatttgcatttgagtgttcttgtcacgtatgatattaacgactagt |
31264285 |
T |
|
| Q |
201 |
ttgagcgactcatcactgcctcttgggacttctgatgaacgttgtttgggtcttctatggccatgttaacgtataatttgcctaggacgtctagactctt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
31264286 |
ttgagcgactcatcactgcctcttgggacttctgatgaacgttgttttggtcttctatggccatgttaacgtataattttcctaggacgtctagactctt |
31264385 |
T |
|
| Q |
301 |
acatgcagta-tctcattctctatggtattcattcatgtttgggactgagaattgttcgggtgggcatagaacatatt |
377 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31264386 |
acatgcagtattctcattctctatggtattcattcatgtttgggactgagaattgttcgggtgggcatagaacatatt |
31264463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 138 - 370
Target Start/End: Complemental strand, 22049815 - 22049582
Alignment:
| Q |
138 |
agacttctgttgagacaaatttgcatctgagtgttcttgtcacgtatgatattaacgactagtttgagcgactcatcactgcctcttgggacttctgatg |
237 |
Q |
| |
|
|||| ||||||||||| ||||||||||||| ||||||||| |||||||| |||| ||| |||| |||||| |||| ||||||||||| || |||||||| |
|
|
| T |
22049815 |
agacatctgttgagacgaatttgcatctgattgttcttgttgcgtatgatgttaatgaccagttcgagcgattcattactgcctcttgtgatttctgatg |
22049716 |
T |
|
| Q |
238 |
aacgttgtttgggtcttctatggccatgttaacgtataatttgcctaggacgtctagactcttacatgcagta-tctcattctctatggtattcattcat |
336 |
Q |
| |
|
|||||||||| ||| |||| ||||| |||| |||| | ||||| | ||||| |||||||| ||||| ||| || ||||||||| | |||| ||||| |
|
|
| T |
22049715 |
aacgttgttttggttttctttggccttgttggcgtaaagattgcccaagacgtgcagactcttccatgcggtattcccattctctacgatattggttcat |
22049616 |
T |
|
| Q |
337 |
gtttgggactgagaattgttcgggtgggcataga |
370 |
Q |
| |
|
||||| || ||||||| |||| ||||||||||| |
|
|
| T |
22049615 |
gtttgcgaatgagaatcgttcttgtgggcataga |
22049582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 27 - 370
Target Start/End: Original strand, 22144698 - 22145043
Alignment:
| Q |
27 |
agtcataacattgagatccataaatataaattattacttatcggataaattaccatctttccaatatt-acggagatgctctattccatgtctttcaact |
125 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||| ||||||||||| ||||||| |||| |||| ||||||||||||||||||| || ||||||| |
|
|
| T |
22144698 |
agtcataacattgcgaaccataaatataaattattactcatcggataaatcaccatctgtccagtattgacggagatgctctattccacgtaattcaact |
22144797 |
T |
|
| Q |
126 |
ttctttgaattcagacttctgttgagacaaatttgcatctgagtgttcttgtcacgtatgatattaacgactagtttgagcgactcatcactgcctcttg |
225 |
Q |
| |
|
| | ||||||| |||| | ||||||||| ||||||||||||| |||||| || |||||||| |||| | | |||| |||||||||||||||| |||||| |
|
|
| T |
22144798 |
tcccttgaatttagacatttgttgagacgaatttgcatctgattgttctcgttgcgtatgatgttaatggccagttcgagcgactcatcactgtctcttg |
22144897 |
T |
|
| Q |
226 |
ggacttctgatgaacgttgtttgggtcttctatggccatgttaacgtataatttgcctaggacgtctagactcttacatgcagta-tctcattctctatg |
324 |
Q |
| |
|
|| |||||||||||||||||| |||||||| ||||| |||| ||||| | ||||||| ||||| |||||||| ||||| ||| || || |||||| | |
|
|
| T |
22144898 |
tgatttctgatgaacgttgttttggtcttctttggccttgttgacgtaaagattgcctaagacgtgcagactcttccatgcggtattcccactctctacg |
22144997 |
T |
|
| Q |
325 |
gtattcattcatgtttgggactgagaattgttcgggtgggcataga |
370 |
Q |
| |
|
|||| |||||||||| || ||||||| |||| ||||||||||| |
|
|
| T |
22144998 |
atattggttcatgtttgcgagtgagaatcgttcttgtgggcataga |
22145043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 27 - 370
Target Start/End: Original strand, 12212515 - 12212860
Alignment:
| Q |
27 |
agtcataacattgagatccataaatataaattattacttatcggataaattaccatctttccaatatt-acggagatgctctattccatgtctttcaact |
125 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| ||||||||||| | ||||| || | |||| ||||||||||||||||||| || ||||||| |
|
|
| T |
12212515 |
agtcataacattgagaaccataaatataaattattactcatcggataaatcatcatctgtctagtattgacggagatgctctattccacgtaattcaact |
12212614 |
T |
|
| Q |
126 |
ttctttgaattcagacttctgttgagacaaatttgcatctgagtgttcttgtcacgtatgatattaacgactagtttgagcgactcatcactgcctcttg |
225 |
Q |
| |
|
| | ||||||| |||| ||||||||||| ||||||||||||| |||||| || ||||||||||||| | | |||| ||||||||||| || | |||||| |
|
|
| T |
12212615 |
tcccttgaatttagacatctgttgagacgaatttgcatctgattgttctcgttgcgtatgatattaatggccagttcgagcgactcattaccgtctcttg |
12212714 |
T |
|
| Q |
226 |
ggacttctgatgaacgttgtttgggtcttctatggccatgttaacgtataatttgcctaggacgtctagactcttacatgcagta-tctcattctctatg |
324 |
Q |
| |
|
|| ||||||||||| |||||| ||||| || ||||| |||| | ||| | || |||| ||||| |||||||| ||||| ||| || ||||||||| | |
|
|
| T |
12212715 |
tgatttctgatgaacattgttttggtctactttggccttgttgaggtaaagatttcctaagacgtgcagactcttccatgcggtattcccattctctacg |
12212814 |
T |
|
| Q |
325 |
gtattcattcatgtttgggactgagaattgttcgggtgggcataga |
370 |
Q |
| |
|
|||| |||||||||| || ||||||| |||| ||||||||||| |
|
|
| T |
12212815 |
atattggttcatgtttgcgagtgagaatcgttcttgtgggcataga |
12212860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 27 - 370
Target Start/End: Complemental strand, 13815076 - 13814732
Alignment:
| Q |
27 |
agtcataacattgagatccataaatataaattattacttatcggataaattaccatctttccaatatt-acggagatgctctattccatgtctttcaact |
125 |
Q |
| |
|
|||||||||| ||||| |||||| |||||||||||||| ||| ||||||| ||||||| |||| |||| ||||||||||||||||||| || ||||||| |
|
|
| T |
13815076 |
agtcataacactgagaaccataagtataaattattactcatcagataaatcaccatctatccagtattgacggagatgctctattccacgtaattcaact |
13814977 |
T |
|
| Q |
126 |
ttctttgaattcagacttctgttgagacaaatttgcatctgagtgttcttgtcacgtatgatattaacgactagtttgagcgactcatcactgcctcttg |
225 |
Q |
| |
|
| | ||||||| |||| ||||||||||| ||||||||||||| |||||| || |||||||| ||| | | |||| ||||||||||| |||| |||||| |
|
|
| T |
13814976 |
tcccttgaatttagacatctgttgagacgaatttgcatctgattgttctcgttgcgtatgatgttagtggccagttcgagcgactcattactgtctcttg |
13814877 |
T |
|
| Q |
226 |
ggacttctgatgaacgttgtttgggtcttctatggccatgttaacgtataatttgcctaggacgtctagactcttacatgcagta-tctcattctctatg |
324 |
Q |
| |
|
|| || | ||||||||||||| |||||||| ||||| |||| ||||| | ||||||| ||||| |||||||| |||| ||| || ||||||||| | |
|
|
| T |
13814876 |
tga-tttttatgaacgttgttttggtcttctttggccttgttgacgtaaagattgcctaagacgtgcagactcttccatgtggtattcccattctctacg |
13814778 |
T |
|
| Q |
325 |
gtattcattcatgtttgggactgagaattgttcgggtgggcataga |
370 |
Q |
| |
|
|||| |||||||||| || ||||||| |||| ||||||||||| |
|
|
| T |
13814777 |
atattggttcatgtttgcgagtgagaatcgttcttgtgggcataga |
13814732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 8e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 138 - 370
Target Start/End: Complemental strand, 44360200 - 44359967
Alignment:
| Q |
138 |
agacttctgttgagacaaatttgcatctgagtgttcttgtcacgtatgatattaacgactagtttgagcgactcatcactgcctcttgggacttctgatg |
237 |
Q |
| |
|
|||| ||||||||||| ||||||||||||| ||||||||| |||||||| |||| ||| |||| |||||| |||| ||||||||||| || |||||||| |
|
|
| T |
44360200 |
agacatctgttgagacgaatttgcatctgattgttcttgttgcgtatgatgttaatgaccagttcgagcgattcattactgcctcttgtgatttctgatg |
44360101 |
T |
|
| Q |
238 |
aacgttgtttgggtcttctatggccatgttaacgtataatttgcctaggacgtctagactcttacatgcagta-tctcattctctatggtattcattcat |
336 |
Q |
| |
|
|||||||||| ||| |||| ||||| |||| |||| | ||||| | ||||| |||||||| ||||| ||| || ||||||||| | |||| ||||| |
|
|
| T |
44360100 |
aacgttgttttggttttctttggccttgttggcgtaaagattgcccaagacgtgcagactcttccatgcggtattcccattctctacgatattggttcat |
44360001 |
T |
|
| Q |
337 |
gtttgggactgagaattgttcgggtgggcataga |
370 |
Q |
| |
|
||||| || ||||||| |||| ||||||||||| |
|
|
| T |
44360000 |
gtttgcgaatgagaatcgttcttgtgggcataga |
44359967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 144 - 297
Target Start/End: Complemental strand, 15851109 - 15850956
Alignment:
| Q |
144 |
ctgttgagacaaatttgcatctgagtgttcttgtcacgtatgatattaacgactagtttgagcgactcatcactgcctcttgggacttctgatgaacgtt |
243 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||| |||| | |||| ||||||||||| |||| || |||| |||||| ||||||||| |
|
|
| T |
15851109 |
ctgttgagacaaatttgcatctgattgttcttgttgtgtatgatgttaatggtgagttcgagcgactcattactgtcttttggaacttcttatgaacgtt |
15851010 |
T |
|
| Q |
244 |
gtttgggtcttctatggccatgttaacgtataatttgcctaggacgtctagact |
297 |
Q |
| |
|
|||| |||||||| ||||| |||| ||||| | ||| |||| ||||| |||||| |
|
|
| T |
15851009 |
gttttggtcttctttggccttgttgacgtaaagttttcctaagacgtgtagact |
15850956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University