View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21100_high_22 (Length: 326)
Name: NF21100_high_22
Description: NF21100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21100_high_22 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 14 - 309
Target Start/End: Complemental strand, 48585794 - 48585499
Alignment:
| Q |
14 |
gagacggctggcaaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggtactttctctttcgagttctttgatgatg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
48585794 |
gagacggctggcaaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggtactttcgctttcgagttctttgatgatg |
48585695 |
T |
|
| Q |
114 |
gtttaccagacggtgatcgttcagccttcagagctcttcagcactccgctgaaattgaggttgctggtagaccctctatttctcaaattatcaagaatca |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
48585694 |
gtttaccagacggtgatcgttcagccttcagagctcttcagcactccgctgaaattgaggttgctggtagaccctctatttctcaaatgatcaagaatca |
48585595 |
T |
|
| Q |
214 |
tgctgatttaaacaaaccattttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaacacaatattccttctgtttt |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48585594 |
tgctgatttaaacaaaccattttcatgtatcataaacaattatttttttccatgggtttgtgatgttgctaatgaacacaatattccttctgtttt |
48585499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 14 - 309
Target Start/End: Complemental strand, 48640367 - 48640072
Alignment:
| Q |
14 |
gagacggctggcaaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggtactttctctttcgagttctttgatgatg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
48640367 |
gagacggctggcaaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggtactttcgctttcgagttctttgacgatg |
48640268 |
T |
|
| Q |
114 |
gtttaccagacggtgatcgttcagccttcagagctcttcagcactccgctgaaattgaggttgctggtagaccctctatttctcaaattatcaagaatca |
213 |
Q |
| |
|
|||||||||| || | |||| |||||||||||||||||||||| |||||||||||||||||||| |||| || |||||| ||||| || |||||||| |
|
|
| T |
48640267 |
gtttaccagatggcagtggttcggccttcagagctcttcagcactatgctgaaattgaggttgctggcagacactttatttcacaaatgataaagaatca |
48640168 |
T |
|
| Q |
214 |
tgctgatttaaacaaaccattttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaacacaatattccttctgtttt |
309 |
Q |
| |
|
||| |||| |||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
48640167 |
tgccgattcaaacaaaccattttcatgtatcataaacaactatttttttccatgggtttgtgacgttgctaatgaacacaatattccttctgtttt |
48640072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 192 - 305
Target Start/End: Original strand, 48618046 - 48618159
Alignment:
| Q |
192 |
tttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaaca |
291 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||| |
|
|
| T |
48618046 |
tttctcaaatgatcaagaatcatgctgattcaaacaaaccattttcatgtatcataaacaatccttttgttccatgggtttgtgatgtagctgatgaaca |
48618145 |
T |
|
| Q |
292 |
caatattccttctg |
305 |
Q |
| |
|
||||||||||| |
|
|
| T |
48618146 |
tggtattccttctg |
48618159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 192 - 305
Target Start/End: Complemental strand, 48661841 - 48661728
Alignment:
| Q |
192 |
tttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaaca |
291 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||||||| |||||||| ||||||||||| ||||||||||||||| | ||| |||||| |
|
|
| T |
48661841 |
tttctcaaatgatcaagaatcatgctgattcaaacaaaccaatttcatgtgtcataaacaatccatttcttccatgggtttgtgatatagcttttgaaca |
48661742 |
T |
|
| Q |
292 |
caatattccttctg |
305 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
48661741 |
caatattccttctg |
48661728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 192 - 309
Target Start/End: Complemental strand, 48653409 - 48653292
Alignment:
| Q |
192 |
tttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaaca |
291 |
Q |
| |
|
|||||||||| ||||||||||||||||| | |||||||||| |||||||| ||||||| ||| || |||||||||||||| ||| ||||||| |
|
|
| T |
48653409 |
tttctcaaatgatcaagaatcatgctgagtcaaacaaaccaatttcatgtctcataaataatccctttcttccttgggtttgtgatgtagctgatgaaca |
48653310 |
T |
|
| Q |
292 |
caatattccttctgtttt |
309 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
48653309 |
tggtattccttctgtttt |
48653292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 194 - 309
Target Start/End: Complemental strand, 11547518 - 11547403
Alignment:
| Q |
194 |
tctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaacaca |
293 |
Q |
| |
|
|||||||| ||||||||||||| ||| | |||||||||| |||| ||||||||||||||| || |||||||||||||| ||| ||||||| |
|
|
| T |
11547518 |
tctcaaatgatcaagaatcatgttgagtcaaacaaaccaatttcttgtatcataaacaatccttttgttccttgggtttgtgatgtagctcatgaacatg |
11547419 |
T |
|
| Q |
294 |
atattccttctgtttt |
309 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
11547418 |
gtattccttctgtttt |
11547403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 190 - 252
Target Start/End: Complemental strand, 48667438 - 48667376
Alignment:
| Q |
190 |
tatttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaa |
252 |
Q |
| |
|
|||||||||||| || |||||||||||||||| ||||||||| |||||||||| |||||||| |
|
|
| T |
48667438 |
tatttctcaaatgataaagaatcatgctgattcgaacaaaccaatttcatgtattataaacaa |
48667376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 192 - 253
Target Start/End: Complemental strand, 48629155 - 48629094
Alignment:
| Q |
192 |
tttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaat |
253 |
Q |
| |
|
||||| |||| ||||||||||||||||||| || |||||| |||||||||||||| ||||| |
|
|
| T |
48629155 |
tttctaaaatgatcaagaatcatgctgattcaagtaaaccaatttcatgtatcatatacaat |
48629094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 118
Target Start/End: Complemental strand, 48653558 - 48653483
Alignment:
| Q |
43 |
taacaacatcattgacaaattagcaactccaattggtgatggtactttctctttcgagttctttgatgatggttta |
118 |
Q |
| |
|
||||||||||||||| |||| | |||||||||||||||||| | || |||| ||||||||||||||| ||||| |
|
|
| T |
48653558 |
taacaacatcattgaaaaatcattcactccaattggtgatggttcactcacttttgagttctttgatgattgttta |
48653483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 119
Target Start/End: Complemental strand, 48661958 - 48661896
Alignment:
| Q |
57 |
acaaattagcaactccaattggtgatggtactttctctttcgagttctttgatgatggtttac |
119 |
Q |
| |
|
|||||||||||||||| || ||||||||| || || |||||||||||||||| || |||||| |
|
|
| T |
48661958 |
acaaattagcaactccgataggtgatggttctctcattttcgagttctttgatcatagtttac |
48661896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 118
Target Start/End: Original strand, 19665230 - 19665328
Alignment:
| Q |
20 |
gctggcaaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggtactttctctttcgagttctttgatgatggttta |
118 |
Q |
| |
|
||||||||| |||||| | ||| ||||||||||| | |||||| | |||||||| ||||||||| || || |||| | |||||||||||||||||| |
|
|
| T |
19665230 |
gctggcaaagacatgcaaactgttaacaacatcactcacaaatcactcactccaataggtgatggttctctcattttccacttctttgatgatggttta |
19665328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University