View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21100_high_25 (Length: 291)
Name: NF21100_high_25
Description: NF21100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21100_high_25 |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-150; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 12320060 - 12320339
Alignment:
| Q |
1 |
aggttcaatcattcttctccttagctatccacctatctaaataacaatttaatatttctggaaattctgtcatggattctttaaatgtgccgtgagcctt |
100 |
Q |
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| T |
12320060 |
aggttcaatcattcttctccttagctatccacctatctaaataacaatttaatatttctggaaattctgtcatggattctttaaatgtgccgtgagcctt |
12320159 |
T |
|
| Q |
101 |
ccaataagagaagcaccaaaataccactctcatcttttatcctacaaatgttaattcaattgggttatacctcttcc-aagaacaaagccaagtgacaca |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
12320160 |
ccaataagagaagcaccaaaataccactctcatcttttatcctacaaatgttaattcaattgggttatacctcttccaaagaacaaagccaagtgacaca |
12320259 |
T |
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| Q |
200 |
tgtttaagagtaaaaaggtaaaaccagcacggttggtgcatatatgctggtgttgcgtttgctttatgtttacacaggtt |
279 |
Q |
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| T |
12320260 |
tgtttaagagtaaaaaggtaaaaccagcacggttggtgcatatatgctggtgtcgcgtttgctttatgtttacacaggtt |
12320339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 6919629 - 6919780
Alignment:
| Q |
1 |
aggttcaatcattcttctccttagctatccacctatctaaataacaatttaatatttctggaaattctgtcatggattctttaaatgtgccgtgagcctt |
100 |
Q |
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||||||||||||| |||||||| ||||| |||||| ||||| || |||||||| ||||||| ||| ||||| |||| |||| ||||| |||||||| |
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| T |
6919629 |
aggttcaatcatttttctccttgtctatctacctatacgaataataacttaatatt-ctggaaactctatcatgcattcattaac-gtgccatgagcctt |
6919726 |
T |
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| Q |
101 |
ccaataagagaagcaccaaaataccactctcatcttttatcctacaaatgttaa |
154 |
Q |
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||||||| ||||||||||||||| | ||||||||||| |||| |||||||| |
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| T |
6919727 |
ccaataaaggaagcaccaaaatactaagttcatcttttattctacgaatgttaa |
6919780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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