View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21100_high_29 (Length: 279)
Name: NF21100_high_29
Description: NF21100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21100_high_29 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 17 - 263
Target Start/End: Complemental strand, 3446389 - 3446144
Alignment:
| Q |
17 |
atgaagaaataatatggagtaagtaagaacaaaataaaacaatgatagagtcnnnnnnntgaaatagaattgatctatgtggttgcaatatccaaaattt |
116 |
Q |
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| T |
3446389 |
atgaagaaataatatggagtaagtaagaacaaaataaaacaatgatagaatcaaaaaa-tgaaatagaattgatctatgtggttgcaatatccaaaattt |
3446291 |
T |
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| Q |
117 |
tcgacaattttcttggttatatttttacacgacagaacattgacatcaaatgattcaaacatatggctatacatgatccagtggcacccacaagcttcat |
216 |
Q |
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| T |
3446290 |
tcgacaattttcttggttttatttttacacgacagaacattgacatcaaatgattcaaacatatggctatacatgatccagtggcacccacaagcttcat |
3446191 |
T |
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| Q |
217 |
atgtagataagttgatatgtcaattttgtaacttattatgcagttat |
263 |
Q |
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| T |
3446190 |
atgtagataagttgatatgtcaattttgtaacttattatgcagttat |
3446144 |
T |
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