View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21100_high_46 (Length: 223)
Name: NF21100_high_46
Description: NF21100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21100_high_46 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 48707350 - 48707145
Alignment:
| Q |
1 |
aaataaaccatgttacagaacataaattcgattcattcctgataaactatatcaacaagctttccaagttttcttgatttctggtatgcatttagttgaa |
100 |
Q |
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| T |
48707350 |
aaataaaccatgttacataacataaattcgattcattcctgataaactatatcaacaagctttccaagttttcttgatttctggtatgcatttagttgaa |
48707251 |
T |
|
| Q |
101 |
gaagcttattatccatctcatcactcgctatagatcgaagctgaaaaagaagtacat-acttaggacatgtccataaattgtttcagtttatttctatag |
199 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
48707250 |
gaagcttattaaccatctcatcactcgctatagatcgaagctgaaaaagaagtacataacttacgacatgtccataaattgtttcagtttatttctatag |
48707151 |
T |
|
| Q |
200 |
gcttat |
205 |
Q |
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|||||| |
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| T |
48707150 |
gcttat |
48707145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 6e-30; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 40 - 158
Target Start/End: Original strand, 16022487 - 16022605
Alignment:
| Q |
40 |
tgataaactatatcaacaagctttccaagttttcttgatttctggtatgcatttagttgaagaagcttattatccatctcatcactcgctatagatcgaa |
139 |
Q |
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|||||||||||||| |||| ||||||| ||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||| | || | ||| |
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| T |
16022487 |
tgataaactatatcgacaaactttccaggttttcttgatttctcatatgcatatagttgaagcagcttattatccatctcatcactcgcaacagcttgaa |
16022586 |
T |
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| Q |
140 |
gctgaaaaagaagtacata |
158 |
Q |
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| T |
16022587 |
gctgaaataggagtacata |
16022605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 40 - 128
Target Start/End: Complemental strand, 14389637 - 14389549
Alignment:
| Q |
40 |
tgataaactatatcaacaagctttccaagttttcttgatttctggtatgcatttagttgaagaagcttattatccatctcatcactcgc |
128 |
Q |
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||||||||||||||||||| ||||||||| ||||||||||| | |||||| ||||||||||||||||||||||||| || ||||||| |
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| T |
14389637 |
tgataaactatatcaacaaactttccaagctttcttgatttgtcaaatgcatatagttgaagaagcttattatccatcccaccactcgc |
14389549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 123
Target Start/End: Original strand, 13881581 - 13881660
Alignment:
| Q |
43 |
taaactatatcaacaagctttccaagttttcttgatttctggtatgcatttagttgaagaagcttattatccatctcatca |
123 |
Q |
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||||||||||| |||| |||| |||||||| ||||||| | ||||||| |||||||||||||||| |||||||||||||| |
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| T |
13881581 |
taaactatatcgacaaacttttcaagttttattgattt-tcatatgcatatagttgaagaagcttaatatccatctcatca |
13881660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 62
Target Start/End: Original strand, 13856781 - 13856819
Alignment:
| Q |
24 |
aaattcgattcattcctgataaactatatcaacaagctt |
62 |
Q |
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|||||| ||||||||||||||||||||||||| |||||| |
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| T |
13856781 |
aaattccattcattcctgataaactatatcaaaaagctt |
13856819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 158
Target Start/End: Original strand, 13856814 - 13856870
Alignment:
| Q |
102 |
aagcttattatccatctcatcactcgctatagatcgaagctgaaaaagaagtacata |
158 |
Q |
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||||||||||||||| || |||| ||||| |||| ||||||||| | |||||||||| |
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| T |
13856814 |
aagcttattatccatttcctcacacgctacagattgaagctgaataggaagtacata |
13856870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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