View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21100_high_6 (Length: 537)
Name: NF21100_high_6
Description: NF21100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21100_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 16 - 515
Target Start/End: Complemental strand, 21532427 - 21531928
Alignment:
| Q |
16 |
gatggaaccaggaacagcattataagtgtcaagaatagagatttgcttaacagcaacgattcgtttagtttcgacgtcgcagcaacggaaaactgtaccg |
115 |
Q |
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| T |
21532427 |
gatggaaccaggaacagcattataagtgtcaagaatagagatttgcttaacagccacgatttgtttagtttcgacgtcgcagcaacggaaaactgtacca |
21532328 |
T |
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| Q |
116 |
aaaccaccttcaccaagcttctcaagaaactccatatcttcaaacggtatcccttcattgatgtttttcttgcgccttggattacaagtactgcagcata |
215 |
Q |
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| T |
21532327 |
aaaccaccttcaccaagcttctcaagaaactccatatcttcaaacggtttcccttcattgatgtttttcttgcgccttggattacaagtactgcagcata |
21532228 |
T |
|
| Q |
216 |
attcacatgctatgatgcgaacaaacctaatcacaagaaatttgattgattaattaaataaattaagtagaattactgaatgattagagtttgattgatg |
315 |
Q |
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| T |
21532227 |
attcgcatgctatgatgcgaacaaacctaatcacaagaaattcgattgattaattaaataaattaagtagaattactgaatgattagagtgtgattgatg |
21532128 |
T |
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| Q |
316 |
aagaacttacagagaatcagagtaatttgaatcgtgttcttggagatttctcagcattgtgaaatggnnnnnnnnnnnnnnnnnnnnnnnnngatttgag |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
21532127 |
aagaacttacagagaatcagagtaatttgaatcgtgttcttggagatttctcagcattgtgaaatgggagaagagaagagagaaagtgagaggatttgag |
21532028 |
T |
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| Q |
416 |
gaagaaaccctaattcttgaggaaaatgatgaaatagcgatgcgaaagaaagagtgagaatttgaagaagaaagggtttttatttatactttgatctgtg |
515 |
Q |
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| T |
21532027 |
gaagaaaccctaattcttgaggagaatgatgaaatagcgatgcgaaagaaagagtgagattttgaagaagaaagggtttttatttatactttgatctgtg |
21531928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 97 - 163
Target Start/End: Complemental strand, 32241924 - 32241858
Alignment:
| Q |
97 |
gcaacggaaaactgtaccgaaaccaccttcaccaagcttctcaagaaactccatatcttcaaacggt |
163 |
Q |
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| T |
32241924 |
gcaacggaaaactctactgaaacctccttcaccaagcatctcaagaaactccatattttctaacggt |
32241858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 222 - 340
Target Start/End: Complemental strand, 32241833 - 32241719
Alignment:
| Q |
222 |
atgctatgatgcgaacaaacctaatcacaagaaatttgattgattaattaaataaattaagtagaattactgaatgattagagtttgattgatgaagaac |
321 |
Q |
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| T |
32241833 |
atgctatgaatcaaacaaacctaatcacaagaaattggatt----aattaaacaaattaacaataattactgaatgattagtgtgtgattaatgaaaaag |
32241738 |
T |
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| Q |
322 |
ttacagagaatcagagtaa |
340 |
Q |
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| T |
32241737 |
ttagagagaaccggagtaa |
32241719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 44 - 152
Target Start/End: Original strand, 32238122 - 32238230
Alignment:
| Q |
44 |
tcaagaatagagatttgcttaacagcaacgattcgtttagtttcgacgtcgcagcaacggaaaactgtaccgaaaccaccttcaccaagcttctcaagaa |
143 |
Q |
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|||||| ||||||||||||| ||||| || |||| |||| ||||||||| | |||| |||||| ||| |||| | |||||| ||||| ||||||||| |
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| T |
32238122 |
tcaagagtagagatttgcttgacagccacaattcaattagcttcgacgtcacggcaagacaaaactctactgaaatctccttcatcaagcatctcaagaa |
32238221 |
T |
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| Q |
144 |
actccatat |
152 |
Q |
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||||||||| |
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| T |
32238222 |
actccatat |
32238230 |
T |
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