View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21100_high_7 (Length: 510)
Name: NF21100_high_7
Description: NF21100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21100_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 456; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 20 - 503
Target Start/End: Complemental strand, 46699810 - 46699328
Alignment:
| Q |
20 |
agatacaagcccaccttcttcaactacatcaagatccaaacctccactttctgactattatcctcttttgctgcctcaacaaactcagactatgacattc |
119 |
Q |
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| T |
46699810 |
agatacaagcccaccttcttcaactacatcaagatccaaacctccactttctgaccattatcctcttttgctgcctcaacaaactcagactatgacattc |
46699711 |
T |
|
| Q |
120 |
aatatggtgcaacaagtttcacttttttacaatcttgcctcaatcttaggaatttcaatcttgtataggttgaaatttcatagtttaggaatgcttcctg |
219 |
Q |
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||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46699710 |
aatatggtgcaacaagtttcactttttcacaatcttgcttcaatcttaggaatttcaatcttgtataggttgaaatttcatagtttaggaatgcttcctg |
46699611 |
T |
|
| Q |
220 |
tgttttggataggttgcaagcaattagactttttcctgtgtataaattttgtattgtatttgctactttgaccttgatattgacagtgttatagttcttt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
46699610 |
tgttttggataggttgcaagcaattagactttttcctgtgtataaattttgtattgtatttgctactttgaccttgatatggacagtgttatagttcttt |
46699511 |
T |
|
| Q |
320 |
aataactggtgtggtaatagtaataaatagcaggtgcttcagaaatccaacaactatcctatggtattctaaattgtgccagtgatgtgattggtgttgg |
419 |
Q |
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| T |
46699510 |
aataactggtgtggt-atagtaataaatagcaggtgcttcagaaatccaacaactatcctatggtattctaaattgtgtcagtgatgtgattggtgttgg |
46699412 |
T |
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| Q |
420 |
tatccaacatcttacactgtacaatagcaatagtaaaaatgtatgaatgcatcattgcttgaatgctctcatttagtacctatg |
503 |
Q |
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| T |
46699411 |
tatccaacatcttacactgtacaatagcaatagtaaaaatgtatgaatgcatcattgcttgaatgctctcatttagtacctatg |
46699328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 193 - 318
Target Start/End: Complemental strand, 46711772 - 46711646
Alignment:
| Q |
193 |
aatttcatagtttaggaatgcttcctgtgttttggataggttgcaagcaattagactttttcctgtgtataaatttt-gtattgtatttgctactttgac |
291 |
Q |
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||||||| |||||||||||||||| | |||| ||||||||||| | |||| ||| |||||| ||||||||||||| |||| ||||||||||||||||| |
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| T |
46711772 |
aatttcacagtttaggaatgcttctcatattttagataggttgcaggtaatttgacattttcccgtgtataaatttttgtatcgtatttgctactttgac |
46711673 |
T |
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| Q |
292 |
cttgatattgacagtgttatagttctt |
318 |
Q |
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||| |||| |||||||||||||||||| |
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| T |
46711672 |
cttaatatggacagtgttatagttctt |
46711646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 193 - 317
Target Start/End: Original strand, 11141580 - 11141705
Alignment:
| Q |
193 |
aatttcatagtttaggaatgcttcctgtgttttggataggttgcaagcaattagactttttcctgtgtataaattttgt-attgtatttgctactttgac |
291 |
Q |
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||||||| ||||||||||||||||| | || ||||||||||||| | |||| ||||| ||||||| ||| |||||| | || |||||| | ||||||| |
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| T |
11141580 |
aatttcacagtttaggaatgcttcccatattgtggataggttgcaggtaatttgacttcttcctgtatattaattttttcatcctatttgatgctttgac |
11141679 |
T |
|
| Q |
292 |
cttgatattgacagtgttatagttct |
317 |
Q |
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|||||||| ||||| |||||||||| |
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| T |
11141680 |
cttgatataaacagtcttatagttct |
11141705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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