View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21100_high_9 (Length: 468)
Name: NF21100_high_9
Description: NF21100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21100_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 395; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 11 - 455
Target Start/End: Complemental strand, 44640262 - 44639804
Alignment:
| Q |
11 |
cataggactccaaaatgaagtgcataaatgcatgatgaatgcacgttacttgcaacgtaaacttcgtgatgctggaattggtacaatgttaaatgaattt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44640262 |
cataggactccaaaatgaagtgcataaatgcatgatgaatgcacgttacttgcaacgtaaacttcgtgatgctggaattggtacaatgttaaatgaattt |
44640163 |
T |
|
| Q |
111 |
agcaacacagttgtttttgagaagcctttggatattgagtttattcgaaagtggagtttagcatatcaaggaaatattgcacatgtggtggtgatgcaac |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44640162 |
agcaacacagttgtttttgagaagcctttggatattgagtttattcgaaagtggagtttagcatatcaaggaaatattgcacatgtggtggtgatgcaac |
44640063 |
T |
|
| Q |
211 |
atgttactattgaaatgttggactcatttgttgatgagtttactaaaaaacgagcaattt------------ggttgagaaagcctatatgtcttgcaga |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
44640062 |
atgttactattgaaatgttggactcatttgttgatgagtttactaaaaaacgagcaatttggtttcagtatgggttgagaaagcctatatgtcttgcaga |
44639963 |
T |
|
| Q |
299 |
tgaaattggtgctgaaaattgtacttgttcattgcacaattgatttgcatcgaatggaacatattgagtaatacatattattttatcaaataataattta |
398 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44639962 |
tgaaattggtgctgaaaattgtatttgttcattgcacaattgatttacatcgaatggaacatattgagtaatacatattattttatcaaataataattta |
44639863 |
T |
|
| Q |
399 |
ctcaatcatgttctcatcaatttgtattatta--ttatttgaaatttatgaataatgtt |
455 |
Q |
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| T |
44639862 |
ctcaatcatgttctcatcaatttgtactattatcttatttgaaatttatgaataatgtt |
44639804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 24 - 322
Target Start/End: Complemental strand, 44668562 - 44668273
Alignment:
| Q |
24 |
aatgaagtgcataaatgcatgatgaatgcacgttacttgcaacgtaaacttcgtgatgctggaattggtacaatgttaaatgaatttagcaacacagttg |
123 |
Q |
| |
|
|||||||||||||| ||||| ||||||||| ||||| | || | |||||||| |||||||| ||| | |||||||| ||||||| |||||| ||||||| |
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| T |
44668562 |
aatgaagtgcataagtgcataatgaatgcatgttacctaaaaaggaaacttcgcgatgctggcatttgcacaatgttgaatgaatatagcaatacagttg |
44668463 |
T |
|
| Q |
124 |
tttttgagaagcctttggatattgagtttattcgaaagtggagtttagcatatcaaggaaatattgcacatgtggtggtgatgcaacatgttactattga |
223 |
Q |
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|||||||||||||||| ||| ||||||||||||||| |||| | |||| ||| ||||| ||||||||||||||||||||||||| || |||||| |||| |
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| T |
44668462 |
tttttgagaagcctttagattgtgagtttattcgaaaatggaatctagcttatgaaggagatattgcacatgtggtggtgatgcagcacgttactgttga |
44668363 |
T |
|
| Q |
224 |
aatgttggactcatttgttgatgagtttactaaaaaacgagcaatttggttgagaaagcctatatgtcttgcagatgaaattggtgctgaaaattgtac |
322 |
Q |
| |
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|||||||||||| |||||||||||||||| |||| | || |||||||||||| | || |||||||| |||||||||||||||||||||| |
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| T |
44668362 |
aatgttggactcctttgttgatgagtttatcaaaacaaga---------ttgagaaagcctttgtgccttgcagacaaaattggtgctgaaaattgtac |
44668273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 75 - 273
Target Start/End: Complemental strand, 44683183 - 44682985
Alignment:
| Q |
75 |
cgtgatgctggaattggtacaatgttaaatgaatttagcaacacagttgtttttgagaagcctttggatattgagtttattcgaaagtggagtttagcat |
174 |
Q |
| |
|
|||||||||||||||||| | |||||||| || || ||||||| |||||| ||||||| ||| | ||| ||| || | ||| | |||| ||| |||| |
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| T |
44683183 |
cgtgatgctggaattggtgctatgttaaacgagttcagcaacatagttgtatttgagaggcccctcgatgatgacttcaatcgtagctggaatttggcat |
44683084 |
T |
|
| Q |
175 |
atcaaggaaatattgcacatgtggtggtgatgcaacatgttactattgaaatgttggactcatttgttgatgagtttactaaaaaacgagcaatttggt |
273 |
Q |
| |
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|| ||||||||||||||||| ||| | ||||||||| || |||||||||||||| | |||||| |||| |||| | |||||||| | ||||||| |
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| T |
44683083 |
gcagtgggaatattgcacatgtggtagtgttacaacatgtttctgttgaaatgttggacacctttgttcatgaatttattgaaaaacgatccatttggt |
44682985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 75 - 132
Target Start/End: Complemental strand, 44660038 - 44659981
Alignment:
| Q |
75 |
cgtgatgctggaattggtacaatgttaaatgaatttagcaacacagttgtttttgaga |
132 |
Q |
| |
|
|||||||||||||||||| | |||||||| |||||||||||| |||||| ||||||| |
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| T |
44660038 |
cgtgatgctggaattggtgctatgttaaacaaatttagcaacatagttgtgtttgaga |
44659981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 12 - 132
Target Start/End: Original strand, 29341682 - 29341802
Alignment:
| Q |
12 |
ataggactccaaaatgaagtgcataaatgcatgatgaatgcacgttacttgcaacgtaaacttcgtgatgctggaattggtacaatgttaaatgaattta |
111 |
Q |
| |
|
||||||||| | |||||||| ||| ||||||| | ||||||||||||||| | | | |||| |||||||||||||||||| |||||||||| || |||| |
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| T |
29341682 |
ataggactcgagaatgaagtacatgaatgcataacgaatgcacgttacttactaaatcaactacgtgatgctggaattggtgcaatgttaaacgagttta |
29341781 |
T |
|
| Q |
112 |
gcaacacagttgtttttgaga |
132 |
Q |
| |
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|||||| |||||||||||||| |
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| T |
29341782 |
gcaacatagttgtttttgaga |
29341802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 12 - 132
Target Start/End: Original strand, 29357709 - 29357829
Alignment:
| Q |
12 |
ataggactccaaaatgaagtgcataaatgcatgatgaatgcacgttacttgcaacgtaaacttcgtgatgctggaattggtacaatgttaaatgaattta |
111 |
Q |
| |
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||||||||| | |||||||| ||| ||||||| | ||||||||||||||| | | | |||| |||||||||||||||||| |||||||||| || |||| |
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| T |
29357709 |
ataggactcgagaatgaagtacatgaatgcataacgaatgcacgttacttactaaatcaactacgtgatgctggaattggtgcaatgttaaacgagttta |
29357808 |
T |
|
| Q |
112 |
gcaacacagttgtttttgaga |
132 |
Q |
| |
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|||||| |||||||||||||| |
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| T |
29357809 |
gcaacatagttgtttttgaga |
29357829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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