View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21100_low_1 (Length: 609)
Name: NF21100_low_1
Description: NF21100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21100_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 10 - 414
Target Start/End: Original strand, 29282319 - 29282721
Alignment:
| Q |
10 |
aatatagaaaggttttgaactgtggccgcggttgtggatacgccacaaaccgttatattatgagaaaatatgaccattatggtcagaattgtggttgcga |
109 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29282319 |
aatatagaaaggttttgaactgtggccgcagttgtggatacgccacaaaccgttatattatgagaaaatatgaccattatggtcagaattgtggttgcga |
29282418 |
T |
|
| Q |
110 |
tgttattacagacacctttatattgcatttcggaccatagtttaaaaccatggtcatgtccatttgaccatgaatcaaatgctctggacaaaatagtgtg |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
29282419 |
tgttattacagacacctttatattgcatttcggaccatagtttaaaaccatggtcatgtccatttgaccatgaatcaaatgctcttgacaaaatagta-- |
29282516 |
T |
|
| Q |
210 |
ctaatattcaatcaatgccatatttatttgcattaattaatgtaaaaacattattcattaatgtaggagttcaaacagcagtgacagagtttagcacagg |
309 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29282517 |
ctagtattcaatcaatgccatatttatttgcattaattaatgtaaaaacattattgattaatgtaggagttcaaacagcagtgacagagtttagcacagg |
29282616 |
T |
|
| Q |
310 |
gaaagtaactgtgacaggaacaatggatgcaaacaagctagtggattatgtctatagaagaaccaaaaaacaagcgaaaatagttcctaaaccagaacct |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
29282617 |
gaaagtaactgtgacaggaacaatggatgcaaacaagctagtggattatgtctatagaagaaccaaaaaacaagcgaaaatagttcctaaacccgaacct |
29282716 |
T |
|
| Q |
410 |
gaacc |
414 |
Q |
| |
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||||| |
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| T |
29282717 |
gaacc |
29282721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 149; Significance: 2e-78; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 231 - 414
Target Start/End: Complemental strand, 6470455 - 6470271
Alignment:
| Q |
231 |
atttatttgcattaattaatgtaaaaacat-tattcattaatgtaggagttcaaacagcagtgacagagtttagcacagggaaagtaactgtgacaggaa |
329 |
Q |
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|||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
6470455 |
atttatttgcattaattaatgtaaaaacttgtattgattaatgtaggagttcaaacagcagtggcagagtttagcacaaggaaagtaactgtgacaggaa |
6470356 |
T |
|
| Q |
330 |
caatggatgcaaacaagctagtggattatgtctatagaagaaccaaaaaacaagcgaaaatagttcctaaaccagaacctgaacc |
414 |
Q |
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|||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
6470355 |
caatggatgcaaacaagctagtggattatgtctataaaaaaaccaaaaaacaagcaaaaatagttcctaaaccagaacctgaacc |
6470271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 268 - 414
Target Start/End: Complemental strand, 42525072 - 42524926
Alignment:
| Q |
268 |
taatgtaggagttcaaacagcagtgacagagtttagcacagggaaagtaactgtgacaggaacaatggatgcaaacaagctagtggattatgtctataga |
367 |
Q |
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|||||||||||| ||||||| || ||| ||| ||||||||| || || | |||||| || || ||||| | |||||| ||||||||| ||| |||||| |
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| T |
42525072 |
taatgtaggagtacaaacagtagagactgagcatagcacaggaaaggttattgtgacggggaccatggacggcaacaagttagtggattttgtttataga |
42524973 |
T |
|
| Q |
368 |
agaaccaaaaaacaagcgaaaatagttcctaaaccagaacctgaacc |
414 |
Q |
| |
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|||| ||||| ||||| ||||||||||| |||||||||||||||| |
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| T |
42524972 |
cgaactaaaaagcaagccaaaatagttccacaaccagaacctgaacc |
42524926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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