View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21100_low_11 (Length: 462)
Name: NF21100_low_11
Description: NF21100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21100_low_11 |
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| [»] scaffold0160 (2 HSPs) |
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Alignment Details
Target: scaffold0160 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: scaffold0160
Description:
Target: scaffold0160; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 18 - 352
Target Start/End: Complemental strand, 19753 - 19419
Alignment:
| Q |
18 |
gggtggtcatagagcaagtcacaagaagattaaaccaaacataacggtggaagaatcgtcaccagaattcgaaattgttgaaaagaaagttcatgaatgt |
117 |
Q |
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| T |
19753 |
gggtggtcatagagcaagtcacaagaagattaaaccgaacataacggtggaagaatcgtcaccagaattcgaaattgttgaaaagaaagttcatgaatgt |
19654 |
T |
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| Q |
118 |
ccggtatgttttcgagtatttaattcgggtcaagcacttggtggacacaaaagaacacatgtgattcatggatcatcatcaacaacagttccaattttca |
217 |
Q |
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| T |
19653 |
ccggtatgttttcgagtatttaattcgggtcaagcacttggtggacacaaaagaacacatgtgattcatggatcatcatcaacaacagttccaattttca |
19554 |
T |
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| Q |
218 |
gctcaaaaagagttacaaaaagtgttatagatcttaaccttcctgctccaattgatgatgatgaagttagtcaaattgaaaattctgctgtttctgatgc |
317 |
Q |
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| T |
19553 |
gctcaaaaagagttacaaaaagtgttatagatcttaaccttcctgctccaattgatgatgatgaagttagtcaaattgaaaattctgctgtttctgatgc |
19454 |
T |
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| Q |
318 |
agaatttctcaaaactcgttaagcatcatggatgg |
352 |
Q |
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| T |
19453 |
agaatttctcaaaactcgttaagcatcatggatgg |
19419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0160; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 403 - 444
Target Start/End: Complemental strand, 19350 - 19309
Alignment:
| Q |
403 |
aataatgttctacaaattttgttatacttatatagttactct |
444 |
Q |
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| T |
19350 |
aataatgttctacaaattttgttatacttatatagttactct |
19309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 177
Target Start/End: Complemental strand, 9546059 - 9545978
Alignment:
| Q |
96 |
tgaaaagaaagttcatgaatgtccggtatgttttcgagtatttaattcgggtcaagcacttggtggacacaaaagaacacat |
177 |
Q |
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| T |
9546059 |
tgaaaagaaaattcatgaatgtccaatttgttttagagaatttgcttcaggtcaagcactaggtggacataggagaacacat |
9545978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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