View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21100_low_12 (Length: 455)
Name: NF21100_low_12
Description: NF21100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21100_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 2 - 440
Target Start/End: Original strand, 33401501 - 33401940
Alignment:
| Q |
2 |
attatatagtgacgaagatatataaatatttacttacaggtatgctctcattaggtctagcacccccaattaaaccgccagtctgaaaatttttaggata |
101 |
Q |
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| T |
33401501 |
attatatagtgacaaagatatataaatatttacttacaggtatgctctcattaagtctagcacccccaattaaactgccagtctgaaaatttttaggata |
33401600 |
T |
|
| Q |
102 |
aacatcagacccaaatttggccttttggtcacttttccatgctatattctttttgttaatcaccaagtccttattattgtttgaaaatctgtatgtgtca |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33401601 |
aacatcagacccaaatttggccttttggtcacttttccatgctatattctttttgttaatcaccaagtccttattattgtttgaaaatctgtatgtgtca |
33401700 |
T |
|
| Q |
202 |
ttgaatagactccatgcagcaaggccgcaaggaacaaccggaagataaccatttgcagtatagtcttcaggaaagcatttgcctacatcattctcatctg |
301 |
Q |
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|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33401701 |
ttgaatagactccaagcagcaaggccacaaggaacaaccggaagataaccatttgcagtatagtcttcaggaaagcatttgcctacatcattctcatctg |
33401800 |
T |
|
| Q |
302 |
ccttactcctcaattgtttatgatctctgcttttaacataactgcaaccaaaatccagcacaatcagtaatcagaaagtaacacaaaaaagcatga-nnn |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
33401801 |
ccttactcctcaattgtttatgatctctgcttttaacataactgcaaccaaaatccagcacaattagtaatcagaaagtaacacaaaaaagcatgatttt |
33401900 |
T |
|
| Q |
401 |
nnnnnnaattacacgtactggcgatgattctggtaaaagt |
440 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
33401901 |
ttttttaattacacgtactggcgatgattctggtaaaagt |
33401940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 33 - 238
Target Start/End: Complemental strand, 43599615 - 43599410
Alignment:
| Q |
33 |
acttacaggtatgctctcattaggtctagcacccccaattaaaccgccagtctgaaaatttttaggataaacatcagacccaaatttggccttttggtca |
132 |
Q |
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||||||||||| ||| ||||| || | ||||| ||||| ||||| ||| |||||||||||||||||||||| ||| |||||||| | |||| |||| |
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| T |
43599615 |
acttacaggtacgctttcattgagttttgcacctccaatcaaacctccactctgaaaatttttaggataaacttcatgaccaaatttagaatttttgtca |
43599516 |
T |
|
| Q |
133 |
cttttccatgctatattctttttgttaatcaccaagtccttattattgtttgaaaatctgtatgtgtcattgaatagactccatgcagcaaggccgcaag |
232 |
Q |
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||| ||||||||| ||||||||||| || || ||||| || | |||||||| |||| ||||||||||| | |||||||||| ||||| |||| |
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| T |
43599515 |
cttccccatgctatgttctttttgttgatagttaaatccttgttgtcaattgaaaatttgtaggtgtcattgaacatactccatgcaatgaggccacaag |
43599416 |
T |
|
| Q |
233 |
gaacaa |
238 |
Q |
| |
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|||||| |
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|
| T |
43599415 |
gaacaa |
43599410 |
T |
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