View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21100_low_13 (Length: 426)
Name: NF21100_low_13
Description: NF21100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21100_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 149; Significance: 1e-78; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 21099609 - 21099765
Alignment:
| Q |
18 |
ttagtaaggctcgaactgccttcgggttacctaaccctaaacagttccaactaatgattttcattgttgtaggtggtgttggacatccaacaccacatct |
117 |
Q |
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| T |
21099609 |
ttagtaaggctcgaactgccttcgggttacctaaccctaaacagttccaactgatgattttcattgttgtaggtggtgttgaacatccaacaccacatct |
21099708 |
T |
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| Q |
118 |
ggtttgtttacaatagtttcaaccatcttcatatcttggcccctcttttttgtcccc |
174 |
Q |
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| T |
21099709 |
ggtttgtttacaatagtttcaaccatcttcatatcttggcccctcttttttgtcccc |
21099765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 280 - 414
Target Start/End: Original strand, 21099901 - 21100036
Alignment:
| Q |
280 |
aaggtgctagaaaaggccactgttcccagcgattccgcaacagtctcaaccgccttgctagtttttctttttcagtattagtaacctttttagtttgcac |
379 |
Q |
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| T |
21099901 |
aaggtgctagaaaaggccactgttcccagcgattccgcaacagtctcaaccgccttgctagtttttctttttcagtattcgtaacctttttagtttgcac |
21100000 |
T |
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| Q |
380 |
ttcttgg-aacaatagttaaaaaagttgaaaatatt |
414 |
Q |
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| T |
21100001 |
ttgttggaaacaatagttaaaaaagttgaaaatatt |
21100036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 174 - 231
Target Start/End: Original strand, 21099834 - 21099891
Alignment:
| Q |
174 |
ctctagttttctccctttagacatactcttcttacatctatcaccctgccttgtccat |
231 |
Q |
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| T |
21099834 |
ctctagttttctccctttagacatactcttcttacatctatcaccctgccttgtccat |
21099891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 20394443 - 20394496
Alignment:
| Q |
58 |
acagttccaactaatgattttcattgttgtaggtggtgttggacatccaacacc |
111 |
Q |
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| T |
20394443 |
acagttccaacttatgattttcattggtctaggcggtgttggtcatccaacacc |
20394496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 113
Target Start/End: Complemental strand, 29941760 - 29941670
Alignment:
| Q |
23 |
aaggctcgaactgccttcgggttacctaaccctaaacagttccaactaatgattttcattgttgtaggtggtgttggacatccaacaccac |
113 |
Q |
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| T |
29941760 |
aaggctcgaactgcctggggactccctaacccccgacagttccaacttaggattttcatggttcttggcggtgttggtcatccaacaccac |
29941670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 120
Target Start/End: Complemental strand, 15701638 - 15701541
Alignment:
| Q |
23 |
aaggctcgaactgccttcgggttacctaaccctaaacagttccaactaatgattttcattgttgtaggtggtgttggacatccaacaccacatctggt |
120 |
Q |
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||||||||||||||| ||||| || |||||| ||||||||||| | ||||||||||| |||| |||||||| ||||||||||| | |||||| |
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| T |
15701638 |
aaggctcgaactgcccgagggttccccaaccctctgcagttccaacttaggattttcattgggataggaggtgttggtcatccaacaccccctctggt |
15701541 |
T |
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