View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21100_low_14 (Length: 413)
Name: NF21100_low_14
Description: NF21100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21100_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 19 - 398
Target Start/End: Original strand, 36808328 - 36808705
Alignment:
| Q |
19 |
cagagaatggaacagaacccgttgaagatcttgtgacgtacttctctaagcatgacgattccgactttccttattacggcaaatgtggtaattttgagta |
118 |
Q |
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| T |
36808328 |
cagagaatggaacagaacccgttgaagatcttgtgacgtacttctctaagcatgacgattccgactttccatattacggcaaacgtggtaattttgagta |
36808427 |
T |
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| Q |
119 |
taagaatgaggcatataggaagcttgaggctcaaattcaaatatataaggagaagtctcacaacctaagtgtacgcatctatctaactgctaggagtgaa |
218 |
Q |
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| T |
36808428 |
taagaatgaggcatataggaagc--aaggctcaaattcaaatatataaggagaagtctcacaacctaagtgtacgcatctatctaactgctaggagtgaa |
36808525 |
T |
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| Q |
219 |
caaaattgaattgcaannnnnnnnattgatggtgaatttagctttggaaaagattttgatttacatgaaaacctttgtccattacatggtatttatattt |
318 |
Q |
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| T |
36808526 |
caaaattgaattgcaattttttttattgatggtgaatttagctttggaaaagattttgatttacatgaaaacctttgtccattacatggtatttatattt |
36808625 |
T |
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| Q |
319 |
tgaaatcatatactggcttgcacaagttttggtgatttgagaaattttatttactttaaaatatttgtatagttgttcct |
398 |
Q |
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| T |
36808626 |
tgaaatcatatactggcttgcacaagttttggtgatttgagaaattttatttactttaaaatatttgtatagttgttcct |
36808705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 60 - 203
Target Start/End: Complemental strand, 36512438 - 36512295
Alignment:
| Q |
60 |
ttctctaagcatgacgattccgactttccttattacggcaaatgtggtaattttgagtataagaatgaggcatataggaagcttgaggctcaaattcaaa |
159 |
Q |
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| T |
36512438 |
ttctctaagtatgacgattccgactttccttatcacgtcaaaagtggtaattttgagtataagaatgaggcatataggctgcttgaggctcaaattcaaa |
36512339 |
T |
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| Q |
160 |
tatataaggagaagtctcacaacctaagtgtacgcatctatcta |
203 |
Q |
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| T |
36512338 |
tctataaggagaagtctcgcaacctaagtgtacgcatctatcta |
36512295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 292 - 371
Target Start/End: Complemental strand, 36511456 - 36511377
Alignment:
| Q |
292 |
tttgtccattacatggtatttatattttgaaatcatatactggcttgcacaagttttggtgatttgagaaattttattta |
371 |
Q |
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| T |
36511456 |
tttgtccattacatggtatttatattttgaaatcacatgttgacatgcacaagttttggtgatttgagaaattttattta |
36511377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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