View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21100_low_19 (Length: 366)
Name: NF21100_low_19
Description: NF21100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21100_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 19 - 359
Target Start/End: Complemental strand, 47194043 - 47193703
Alignment:
| Q |
19 |
atcaaagccactttaaccaaattctcaacctgattaacatcatattttccttccaaattaccatcaacaatctcttcaatccaaaacatagtcgtaggtg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47194043 |
atcaaagccactttaaccaaattctcaacctgattaacatcatattttccttccaaattaccatcaacaatctcttcaatccaaaacatagtcgtaggtg |
47193944 |
T |
|
| Q |
119 |
cacttttcaccttttccatcacccaactcaccattcgatgatgatgctccaaacctccactattatcaacaacactatgaatttccattggactttttcc |
218 |
Q |
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| T |
47193943 |
cacttttcaccttttccatcacccaactcaccattcgatgatgatgctccaaacctccactattatcaacaacactatgaatttccattggactttttcc |
47193844 |
T |
|
| Q |
219 |
actcaccatttcaagcaaaacaatcccataactataaacatcaacttttgacgtaatacgaagattataaacccattcaggtgccatataacctcttgtc |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47193843 |
actcaccatttcaagcaaaacaatcccataactataaacatcaacttttgaagtaatacgaagattataaacccattcaggtgccatataacctcttgtc |
47193744 |
T |
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| Q |
319 |
cctcttattcttgaaaaagcagaactatcacgttcatctct |
359 |
Q |
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| T |
47193743 |
cctcttattcttgaaaaagcagaactatcacgttcatctct |
47193703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 322
Target Start/End: Original strand, 26698512 - 26698590
Alignment:
| Q |
244 |
ccataactataaacatcaacttttgacgtaatacgaagattataaacccattcaggtgccatataacctcttgtccctc |
322 |
Q |
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| T |
26698512 |
ccatagctataaacatccacttttgaagtaatttgcatgttgaaaacccattcaggtgccatgtaacctcttgtccctc |
26698590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 322
Target Start/End: Original strand, 26733675 - 26733753
Alignment:
| Q |
244 |
ccataactataaacatcaacttttgacgtaatacgaagattataaacccattcaggtgccatataacctcttgtccctc |
322 |
Q |
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||||| ||||||||||| |||||||| ||||| | | || ||||||||||||||||||| |||||||||||||||| |
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| T |
26733675 |
ccatagctataaacatccacttttgaagtaatttgcatgttgaaaacccattcaggtgccatgtaacctcttgtccctc |
26733753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 287 - 322
Target Start/End: Original strand, 26750879 - 26750914
Alignment:
| Q |
287 |
aaacccattcaggtgccatataacctcttgtccctc |
322 |
Q |
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| T |
26750879 |
aaacccattcaggtgccatgtaacctcttgtccctc |
26750914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 323
Target Start/End: Complemental strand, 39132486 - 39132397
Alignment:
| Q |
234 |
caaaacaatcccataactataaacatcaacttttgacgtaatacgaagattataaacccattcaggtgccatataacctcttgtccctct |
323 |
Q |
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|
||||||||||||||||||||||||||| ||||| || || || | | ||| ||||||||||||| |||||||| |||||||| ||||| |
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| T |
39132486 |
caaaacaatcccataactataaacatccactttagatgttattggtaaattgaaaacccattcaggagccatatatcctcttgttcctct |
39132397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 327
Target Start/End: Original strand, 23466619 - 23466655
Alignment:
| Q |
291 |
ccattcaggtgccatataacctcttgtccctcttatt |
327 |
Q |
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|||||| |||||||||||||||||||| ||||||||| |
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| T |
23466619 |
ccattctggtgccatataacctcttgttcctcttatt |
23466655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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