View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21100_low_20 (Length: 363)

Name: NF21100_low_20
Description: NF21100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21100_low_20
NF21100_low_20
[»] chr6 (10 HSPs)
chr6 (133-313)||(5638149-5638348)
chr6 (314-363)||(24125972-24126021)
chr6 (314-363)||(24126717-24126766)
chr6 (313-363)||(7193337-7193387)
chr6 (314-363)||(3543062-3543111)
chr6 (314-363)||(33480627-33480676)
chr6 (319-363)||(3542819-3542863)
chr6 (319-363)||(22582478-22582522)
chr6 (319-363)||(22587309-22587353)
chr6 (319-363)||(33479701-33479745)
[»] chr7 (20 HSPs)
chr7 (314-363)||(27599211-27599260)
chr7 (314-363)||(27600094-27600143)
chr7 (321-362)||(24995859-24995900)
chr7 (327-362)||(24996683-24996718)
chr7 (327-363)||(29060738-29060774)
chr7 (311-363)||(38778851-38778903)
chr7 (327-363)||(42607094-42607130)
chr7 (313-356)||(9122649-9122692)
chr7 (312-363)||(41194511-41194562)
chr7 (313-363)||(37468909-37468959)
chr7 (314-363)||(668179-668228)
chr7 (314-363)||(17145622-17145671)
chr7 (314-363)||(37469004-37469053)
chr7 (314-363)||(38779562-38779611)
chr7 (312-361)||(45887981-45888030)
chr7 (319-363)||(7677808-7677852)
chr7 (327-363)||(32871139-32871175)
chr7 (327-363)||(40257801-40257837)
chr7 (327-363)||(40320409-40320445)
chr7 (314-350)||(46759274-46759310)
[»] chr4 (24 HSPs)
chr4 (314-363)||(30808621-30808670)
chr4 (311-363)||(30809504-30809556)
chr4 (314-363)||(45330565-45330614)
chr4 (314-363)||(45331452-45331501)
chr4 (313-363)||(47377597-47377647)
chr4 (314-363)||(47376852-47376901)
chr4 (327-363)||(25970119-25970155)
chr4 (312-363)||(23425206-23425257)
chr4 (312-363)||(25970802-25970853)
chr4 (325-363)||(34371473-34371511)
chr4 (314-363)||(36450728-36450777)
chr4 (327-362)||(232049-232084)
chr4 (313-363)||(11417686-11417736)
chr4 (321-363)||(23383317-23383359)
chr4 (313-363)||(26611282-26611332)
chr4 (313-363)||(29651331-29651381)
chr4 (313-363)||(39652058-39652108)
chr4 (314-363)||(6246784-6246833)
chr4 (314-363)||(11417936-11417985)
chr4 (314-363)||(36865716-36865765)
chr4 (314-363)||(39429225-39429274)
chr4 (327-363)||(39429936-39429972)
chr4 (327-363)||(47326788-47326824)
chr4 (327-363)||(47341584-47341620)
[»] chr2 (14 HSPs)
chr2 (314-363)||(37546563-37546612)
chr2 (313-363)||(37545675-37545725)
chr2 (312-362)||(7868141-7868191)
chr2 (312-361)||(5005460-5005509)
chr2 (312-363)||(21471015-21471066)
chr2 (327-362)||(36390970-36391005)
chr2 (327-362)||(36391672-36391707)
chr2 (321-363)||(6084878-6084920)
chr2 (313-363)||(20991286-20991336)
chr2 (327-361)||(23876064-23876098)
chr2 (313-362)||(5276464-5276513)
chr2 (314-363)||(14573261-14573310)
chr2 (314-363)||(21471953-21472002)
chr2 (327-363)||(41519924-41519960)
[»] chr1 (16 HSPs)
chr1 (313-363)||(11032218-11032268)
chr1 (314-363)||(11031431-11031480)
chr1 (314-363)||(47334899-47334948)
chr1 (327-362)||(30466195-30466230)
chr1 (312-363)||(51974435-51974486)
chr1 (321-363)||(45922239-45922281)
chr1 (328-361)||(14924688-14924721)
chr1 (314-363)||(16270207-16270256)
chr1 (314-363)||(23440864-23440913)
chr1 (313-362)||(29334213-29334262)
chr1 (321-362)||(30780984-30781025)
chr1 (313-362)||(35616775-35616824)
chr1 (313-362)||(43316356-43316405)
chr1 (313-362)||(51987826-51987875)
chr1 (314-362)||(36272547-36272595)
chr1 (327-363)||(48835096-48835132)
[»] chr5 (13 HSPs)
chr5 (312-361)||(9142045-9142094)
chr5 (327-363)||(4789533-4789569)
chr5 (314-363)||(1970513-1970562)
chr5 (314-361)||(4555390-4555437)
chr5 (312-363)||(8204118-8204169)
chr5 (313-363)||(4607135-4607185)
chr5 (327-361)||(26712389-26712423)
chr5 (327-361)||(26982127-26982161)
chr5 (313-363)||(33002815-33002865)
chr5 (314-363)||(15184016-15184065)
chr5 (314-354)||(473052-473092)
chr5 (314-362)||(17767591-17767639)
chr5 (311-363)||(36626629-36626681)
[»] chr8 (14 HSPs)
chr8 (314-361)||(43924490-43924537)
chr8 (313-363)||(43433810-43433860)
chr8 (314-363)||(42345394-42345443)
chr8 (312-363)||(42914812-42914863)
chr8 (312-362)||(61452-61502)
chr8 (313-363)||(34992263-34992313)
chr8 (313-363)||(41859309-41859359)
chr8 (314-363)||(7054090-7054139)
chr8 (314-363)||(43925017-43925066)
chr8 (314-362)||(1365829-1365877)
chr8 (310-362)||(13935053-13935105)
chr8 (327-363)||(27322586-27322622)
chr8 (327-363)||(35840529-35840565)
chr8 (327-363)||(35943089-35943125)
[»] chr3 (8 HSPs)
chr3 (314-363)||(43768026-43768075)
chr3 (313-361)||(38337478-38337526)
chr3 (327-363)||(49161807-49161843)
chr3 (312-363)||(36750436-36750487)
chr3 (314-361)||(38336944-38336991)
chr3 (327-362)||(45501294-45501329)
chr3 (327-363)||(33455780-33455816)
chr3 (327-363)||(45297562-45297598)
[»] scaffold2003 (1 HSPs)
scaffold2003 (327-362)||(531-566)
[»] scaffold0311 (1 HSPs)
scaffold0311 (313-363)||(159-209)
[»] scaffold0150 (1 HSPs)
scaffold0150 (314-356)||(14012-14054)


Alignment Details
Target: chr6 (Bit Score: 130; Significance: 3e-67; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 133 - 313
Target Start/End: Original strand, 5638149 - 5638348
Alignment:
Q  133 atcagattttttacttttcaataaagcctggagtttgttttgatttggtaaagactcaaatgcttaattcagtgtctaattaaagtgaactagag----- 227  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||         
T  5638149 atcagattttttacttttcaataaagcctgtagtttgttttgatttggtaaagactcaaatgcttaagtcagtgtctaattaaagtgaactagagttgca 5638248  T
Q  228 --------------attgcttatatagctttgcttgcatgtgagactactcattgtactcaaacaacttccactagaatttggtgtgatgttctactgta 313  Q
                  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5638249 taaatgttgcagagattgcttatatagctttgcttgcatgtgagactactcattgtactcaaacaacttccactagaatttggtgtgatgttctactgta 5638348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 314 - 363
Target Start/End: Original strand, 24125972 - 24126021
Alignment:
Q  314 ggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  24125972 ggtggcatttaatttgggaaaggggagttgtttcccaccatgggaaagtt 24126021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 314 - 363
Target Start/End: Complemental strand, 24126766 - 24126717
Alignment:
Q  314 ggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    ||||||||||||  ||||||||||||||||||||||| ||||||||||||    
T  24126766 ggtggcatttaatttgggaaaggggagttgtttcccatcatgggaaagtt 24126717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 363
Target Start/End: Original strand, 7193337 - 7193387
Alignment:
Q  313 aggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    ||||| |||||||  ||||||||| ||||| ||||||||||||||||||||    
T  7193337 aggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagtt 7193387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 363
Target Start/End: Complemental strand, 3543111 - 3543062
Alignment:
Q  314 ggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    |||| |||||||  ||||||||| ||||| ||||||||||||||||||||    
T  3543111 ggtgccatttaatttgggaaaggagagttttttcccaccatgggaaagtt 3543062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 363
Target Start/End: Complemental strand, 33480676 - 33480627
Alignment:
Q  314 ggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    |||| |||||||  ||||||||| ||||| ||||||||||||||||||||    
T  33480676 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagtt 33480627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 363
Target Start/End: Original strand, 3542819 - 3542863
Alignment:
Q  319 catttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    |||||||  ||||||||| ||||| ||||||||||||||||||||    
T  3542819 catttaatttgggaaaggagagttttttcccaccatgggaaagtt 3542863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 363
Target Start/End: Complemental strand, 22582522 - 22582478
Alignment:
Q  319 catttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    |||||||  ||||||||| ||||| ||||||||||||||||||||    
T  22582522 catttaatttgggaaaggagagttctttcccaccatgggaaagtt 22582478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 363
Target Start/End: Complemental strand, 22587353 - 22587309
Alignment:
Q  319 catttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    |||||||  ||||||||| ||||| ||||||||||||||||||||    
T  22587353 catttaatttgggaaaggagagttctttcccaccatgggaaagtt 22587309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 363
Target Start/End: Original strand, 33479701 - 33479745
Alignment:
Q  319 catttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    |||||||  ||||||||| ||||| ||||||||||||||||||||    
T  33479701 catttaatttgggaaaggagagttatttcccaccatgggaaagtt 33479745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 314 - 363
Target Start/End: Original strand, 27599211 - 27599260
Alignment:
Q  314 ggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27599211 ggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 27599260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 314 - 363
Target Start/End: Complemental strand, 27600143 - 27600094
Alignment:
Q  314 ggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27600143 ggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 27600094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 321 - 362
Target Start/End: Original strand, 24995859 - 24995900
Alignment:
Q  321 tttaaaatgggaaaggggagttgtttcccaccatgggaaagt 362  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  24995859 tttagaatgggaaaggggagttgtttcccaccatgggaaagt 24995900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 327 - 362
Target Start/End: Complemental strand, 24996718 - 24996683
Alignment:
Q  327 atgggaaaggggagttgtttcccaccatgggaaagt 362  Q
    ||||||||||||||||||||||||||||||||||||    
T  24996718 atgggaaaggggagttgtttcccaccatgggaaagt 24996683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 327 - 363
Target Start/End: Complemental strand, 29060774 - 29060738
Alignment:
Q  327 atgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    ||||||||||||| |||||||||||||||||||||||    
T  29060774 atgggaaaggggaattgtttcccaccatgggaaagtt 29060738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 363
Target Start/End: Original strand, 38778851 - 38778903
Alignment:
Q  311 gtaggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    ||||||| |||||||  ||||||||| ||||| ||||||||||||||||||||    
T  38778851 gtaggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagtt 38778903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 327 - 363
Target Start/End: Original strand, 42607094 - 42607130
Alignment:
Q  327 atgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    ||||||||||||| |||||||||||||||||||||||    
T  42607094 atgggaaaggggaattgtttcccaccatgggaaagtt 42607130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 313 - 356
Target Start/End: Original strand, 9122649 - 9122692
Alignment:
Q  313 aggtggcatttaaaatgggaaaggggagttgtttcccaccatgg 356  Q
    ||||||||||||  ||||||||||| ||||||||||||||||||    
T  9122649 aggtggcatttagcatgggaaagggaagttgtttcccaccatgg 9122692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 312 - 363
Target Start/End: Original strand, 41194511 - 41194562
Alignment:
Q  312 taggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    |||||| |||||||  ||||||||| ||||| ||||||||||||||||||||    
T  41194511 taggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagtt 41194562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 363
Target Start/End: Original strand, 37468909 - 37468959
Alignment:
Q  313 aggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    ||||| |||||||  ||||||||| ||||| ||||||||||||||||||||    
T  37468909 aggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagtt 37468959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 363
Target Start/End: Original strand, 668179 - 668228
Alignment:
Q  314 ggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    |||| |||||||  ||||||||| ||||| ||||||||||||||||||||    
T  668179 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagtt 668228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 363
Target Start/End: Original strand, 17145622 - 17145671
Alignment:
Q  314 ggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    |||| |||||||  ||||||||| ||||| ||||||||||||||||||||    
T  17145622 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagtt 17145671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 363
Target Start/End: Complemental strand, 37469053 - 37469004
Alignment:
Q  314 ggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    |||| |||||||  ||||||||| ||||| ||||||||||||||||||||    
T  37469053 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagtt 37469004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 363
Target Start/End: Complemental strand, 38779611 - 38779562
Alignment:
Q  314 ggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    |||| |||||||  ||||||||| ||||| ||||||||||||||||||||    
T  38779611 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagtt 38779562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 361
Target Start/End: Complemental strand, 45888030 - 45887981
Alignment:
Q  312 taggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaag 361  Q
    ||||||||||||||  |||||||||  |||| ||||||||||||||||||    
T  45888030 taggtggcatttaatttgggaaaggctagttttttcccaccatgggaaag 45887981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 363
Target Start/End: Complemental strand, 7677852 - 7677808
Alignment:
Q  319 catttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    |||||||  ||||||||| ||||| ||||||||||||||||||||    
T  7677852 catttaatttgggaaaggagagttctttcccaccatgggaaagtt 7677808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 327 - 363
Target Start/End: Complemental strand, 32871175 - 32871139
Alignment:
Q  327 atgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  32871175 atgggaatggggagttgtttcccaccataggaaagtt 32871139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 327 - 363
Target Start/End: Complemental strand, 40257837 - 40257801
Alignment:
Q  327 atgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    |||||||| |||||||||||||||||||| |||||||    
T  40257837 atgggaaatgggagttgtttcccaccatgagaaagtt 40257801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 327 - 363
Target Start/End: Complemental strand, 40320445 - 40320409
Alignment:
Q  327 atgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    |||||||||| ||||||||||||||||||| ||||||    
T  40320445 atgggaaaggagagttgtttcccaccatggaaaagtt 40320409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 314 - 350
Target Start/End: Complemental strand, 46759310 - 46759274
Alignment:
Q  314 ggtggcatttaaaatgggaaaggggagttgtttccca 350  Q
    |||||||||||  ||||||||||||||||||||||||    
T  46759310 ggtggcatttagtatgggaaaggggagttgtttccca 46759274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 314 - 363
Target Start/End: Original strand, 30808621 - 30808670
Alignment:
Q  314 ggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  30808621 ggtggcatttaaaatgggaaaggagagttgtttcccaccatgggaaagtt 30808670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 311 - 363
Target Start/End: Complemental strand, 30809556 - 30809504
Alignment:
Q  311 gtaggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    |||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  30809556 gtaggtggcatttaaaatgggaaaggggagttgttttccaccatgagaaagtt 30809504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 314 - 363
Target Start/End: Original strand, 45330565 - 45330614
Alignment:
Q  314 ggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  45330565 ggtggaatttaaaatgggaaaggggagttgtttcccaccatggaaaagtt 45330614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 314 - 363
Target Start/End: Complemental strand, 45331501 - 45331452
Alignment:
Q  314 ggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  45331501 ggtggcatttaaaatgagaaaggggagttgtttcccaccatgagaaagtt 45331452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 313 - 363
Target Start/End: Complemental strand, 47377647 - 47377597
Alignment:
Q  313 aggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    ||||| |||||||  ||||||||||||||||||||||||||||||||||||    
T  47377647 aggtgccatttaatttgggaaaggggagttgtttcccaccatgggaaagtt 47377597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 314 - 363
Target Start/End: Original strand, 47376852 - 47376901
Alignment:
Q  314 ggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    ||||||||||||  ||||||||||||||||||||||| ||||||||||||    
T  47376852 ggtggcatttaatttgggaaaggggagttgtttcccatcatgggaaagtt 47376901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 327 - 363
Target Start/End: Original strand, 25970119 - 25970155
Alignment:
Q  327 atgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    |||||||||||||||||||||||||||||||||||||    
T  25970119 atgggaaaggggagttgtttcccaccatgggaaagtt 25970155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 312 - 363
Target Start/End: Complemental strand, 23425257 - 23425206
Alignment:
Q  312 taggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    |||||||||||||  ||||||| || ||||||||||||||||||||||||||    
T  23425257 taggtggcatttagtatgggaatggagagttgtttcccaccatgggaaagtt 23425206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 312 - 363
Target Start/End: Complemental strand, 25970853 - 25970802
Alignment:
Q  312 taggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    |||||||||||||  |||||||| |||||||||||||||||||| |||||||    
T  25970853 taggtggcatttagtatgggaaaagggagttgtttcccaccatgagaaagtt 25970802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 325 - 363
Target Start/End: Original strand, 34371473 - 34371511
Alignment:
Q  325 aaatgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  34371473 aaatgggaaaggggaattgtttcccaccatgggaaagtt 34371511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 314 - 363
Target Start/End: Original strand, 36450728 - 36450777
Alignment:
Q  314 ggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    ||||| |||||  |||||||||||||||||||| ||||||||||||||||    
T  36450728 ggtggtatttagcatgggaaaggggagttgttttccaccatgggaaagtt 36450777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 327 - 362
Target Start/End: Complemental strand, 232084 - 232049
Alignment:
Q  327 atgggaaaggggagttgtttcccaccatgggaaagt 362  Q
    ||||||||||| ||||||||||||||||||||||||    
T  232084 atgggaaagggaagttgtttcccaccatgggaaagt 232049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 363
Target Start/End: Original strand, 11417686 - 11417736
Alignment:
Q  313 aggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    ||||| |||||||  ||||||||| ||||| ||||||||||||||||||||    
T  11417686 aggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagtt 11417736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 321 - 363
Target Start/End: Original strand, 23383317 - 23383359
Alignment:
Q  321 tttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    |||| |||| |||||| ||||||||||||||||||||||||||    
T  23383317 tttagaatgagaaaggagagttgtttcccaccatgggaaagtt 23383359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 363
Target Start/End: Complemental strand, 26611332 - 26611282
Alignment:
Q  313 aggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    ||||| |||||||  ||||||||| ||||| ||||||||||||||||||||    
T  26611332 aggtgtcatttaatttgggaaaggagagttttttcccaccatgggaaagtt 26611282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 363
Target Start/End: Complemental strand, 29651381 - 29651331
Alignment:
Q  313 aggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    ||||| |||||||  ||||||||| ||||| ||||||||||||||||||||    
T  29651381 aggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagtt 29651331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 363
Target Start/End: Complemental strand, 39652108 - 39652058
Alignment:
Q  313 aggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    ||||||||||||  ||||||| || |||||||||| |||||||||||||||    
T  39652108 aggtggcatttagcatgggaatggagagttgtttctcaccatgggaaagtt 39652058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 363
Target Start/End: Original strand, 6246784 - 6246833
Alignment:
Q  314 ggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    |||||| |||||  |||||||||| | |||||||||||||||||||||||    
T  6246784 ggtggcgtttaatttgggaaagggaaattgtttcccaccatgggaaagtt 6246833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 363
Target Start/End: Complemental strand, 11417985 - 11417936
Alignment:
Q  314 ggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    |||| |||||||  ||||||||| ||||| ||||||||||||||||||||    
T  11417985 ggtgtcatttaatttgggaaaggagagttctttcccaccatgggaaagtt 11417936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 363
Target Start/End: Complemental strand, 36865765 - 36865716
Alignment:
Q  314 ggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    |||| |||||||  ||||||||| ||||| ||||||||||||||||||||    
T  36865765 ggtgacatttaatttgggaaaggagagttctttcccaccatgggaaagtt 36865716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 363
Target Start/End: Original strand, 39429225 - 39429274
Alignment:
Q  314 ggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    |||||||||||  ||||||| || ||||||||||| ||||||||||||||    
T  39429225 ggtggcatttagcatgggaatggagagttgtttcctaccatgggaaagtt 39429274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 327 - 363
Target Start/End: Complemental strand, 39429972 - 39429936
Alignment:
Q  327 atgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    ||||||| || ||||||||||||||||||||||||||    
T  39429972 atgggaatggagagttgtttcccaccatgggaaagtt 39429936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 327 - 363
Target Start/End: Complemental strand, 47326824 - 47326788
Alignment:
Q  327 atgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    ||||||||||  |||||||||||||||||||||||||    
T  47326824 atgggaaaggaaagttgtttcccaccatgggaaagtt 47326788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 327 - 363
Target Start/End: Complemental strand, 47341620 - 47341584
Alignment:
Q  327 atgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    ||||||||||  |||||||||||||||||||||||||    
T  47341620 atgggaaaggaaagttgtttcccaccatgggaaagtt 47341584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 314 - 363
Target Start/End: Complemental strand, 37546612 - 37546563
Alignment:
Q  314 ggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  37546612 ggtggcatttaaaatgggaaaggggagttgtttcccatcatgggaaagtt 37546563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 313 - 363
Target Start/End: Original strand, 37545675 - 37545725
Alignment:
Q  313 aggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  37545675 aggtggcatttaaaataggaaagggaagttgtttcccaccatgggaaagtt 37545725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 312 - 362
Target Start/End: Complemental strand, 7868191 - 7868141
Alignment:
Q  312 taggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagt 362  Q
    ||||||| |||||  ||| ||||||||||||||||||||||||||||||||    
T  7868191 taggtgggatttagcatgagaaaggggagttgtttcccaccatgggaaagt 7868141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 312 - 361
Target Start/End: Original strand, 5005460 - 5005509
Alignment:
Q  312 taggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaag 361  Q
    |||||||||||||  ||||||||||||| |||||||||| ||||||||||    
T  5005460 taggtggcatttagcatgggaaaggggaattgtttcccatcatgggaaag 5005509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 312 - 363
Target Start/End: Original strand, 21471015 - 21471066
Alignment:
Q  312 taggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    |||||| |||||||  ||||||||| ||||| ||||||||||||||||||||    
T  21471015 taggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagtt 21471066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 327 - 362
Target Start/End: Original strand, 36390970 - 36391005
Alignment:
Q  327 atgggaaaggggagttgtttcccaccatgggaaagt 362  Q
    ||||||||||| ||||||||||||||||||||||||    
T  36390970 atgggaaagggaagttgtttcccaccatgggaaagt 36391005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 327 - 362
Target Start/End: Complemental strand, 36391707 - 36391672
Alignment:
Q  327 atgggaaaggggagttgtttcccaccatgggaaagt 362  Q
    |||||||||||||||||||| |||||||||||||||    
T  36391707 atgggaaaggggagttgttttccaccatgggaaagt 36391672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 321 - 363
Target Start/End: Original strand, 6084878 - 6084920
Alignment:
Q  321 tttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    ||||| ||||||||||||| |||||||||| ||||||||||||    
T  6084878 tttaacatgggaaaggggaattgtttcccatcatgggaaagtt 6084920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 363
Target Start/End: Original strand, 20991286 - 20991336
Alignment:
Q  313 aggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    ||||||||||||  ||||||| || ||||||||| ||||||||||||||||    
T  20991286 aggtggcatttagcatgggaatggagagttgttttccaccatgggaaagtt 20991336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 327 - 361
Target Start/End: Complemental strand, 23876098 - 23876064
Alignment:
Q  327 atgggaaaggggagttgtttcccaccatgggaaag 361  Q
    |||||||| ||||||||||||||||||||||||||    
T  23876098 atgggaaatgggagttgtttcccaccatgggaaag 23876064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 362
Target Start/End: Original strand, 5276464 - 5276513
Alignment:
Q  313 aggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagt 362  Q
    |||||||||||||  ||||||||| || || |||||||||||||||||||    
T  5276464 aggtggcatttaacttgggaaaggagacttctttcccaccatgggaaagt 5276513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 363
Target Start/End: Original strand, 14573261 - 14573310
Alignment:
Q  314 ggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    |||| |||||||  ||||||||| ||||| ||||||||||||||||||||    
T  14573261 ggtgccatttaatttgggaaaggagagttttttcccaccatgggaaagtt 14573310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 363
Target Start/End: Complemental strand, 21472002 - 21471953
Alignment:
Q  314 ggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    |||| |||||||  ||||||||| ||||| ||||||||||||||||||||    
T  21472002 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagtt 21471953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 327 - 363
Target Start/End: Complemental strand, 41519960 - 41519924
Alignment:
Q  327 atgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    ||||||||||| |||| ||||||||||||||||||||    
T  41519960 atgggaaagggaagttttttcccaccatgggaaagtt 41519924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 313 - 363
Target Start/End: Complemental strand, 11032268 - 11032218
Alignment:
Q  313 aggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    ||||||||||||| ||||||||||||| | |||||||||||||||||||||    
T  11032268 aggtggcatttaacatgggaaaggggaatagtttcccaccatgggaaagtt 11032218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 314 - 363
Target Start/End: Original strand, 11031431 - 11031480
Alignment:
Q  314 ggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    |||||||||||| ||||||||||||| | |||||||||||||||||||||    
T  11031431 ggtggcatttaacatgggaaaggggaatagtttcccaccatgggaaagtt 11031480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 314 - 363
Target Start/End: Complemental strand, 47334948 - 47334899
Alignment:
Q  314 ggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    |||||||||||  |||||||| ||||||||||||||||||| ||||||||    
T  47334948 ggtggcatttagtatgggaaaagggagttgtttcccaccataggaaagtt 47334899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 327 - 362
Target Start/End: Original strand, 30466195 - 30466230
Alignment:
Q  327 atgggaaaggggagttgtttcccaccatgggaaagt 362  Q
    ||||||| ||||||||||||||||||||||||||||    
T  30466195 atgggaatggggagttgtttcccaccatgggaaagt 30466230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 312 - 363
Target Start/End: Original strand, 51974435 - 51974486
Alignment:
Q  312 taggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    |||||| |||||||  ||||||||| ||||| ||||||||||||||||||||    
T  51974435 taggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagtt 51974486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 321 - 363
Target Start/End: Original strand, 45922239 - 45922281
Alignment:
Q  321 tttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    ||||| |||||||||||  ||||||||||||||||||||||||    
T  45922239 tttaacatgggaaagggaggttgtttcccaccatgggaaagtt 45922281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 361
Target Start/End: Original strand, 14924688 - 14924721
Alignment:
Q  328 tgggaaaggggagttgtttcccaccatgggaaag 361  Q
    |||||||||| |||||||||||||||||||||||    
T  14924688 tgggaaagggaagttgtttcccaccatgggaaag 14924721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 363
Target Start/End: Original strand, 16270207 - 16270256
Alignment:
Q  314 ggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    |||| |||||||  ||||||||| ||||| ||||||||||||||||||||    
T  16270207 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagtt 16270256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 363
Target Start/End: Complemental strand, 23440913 - 23440864
Alignment:
Q  314 ggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    |||| |||||||  ||||||||| ||||| ||||||||||||||||||||    
T  23440913 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagtt 23440864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 362
Target Start/End: Original strand, 29334213 - 29334262
Alignment:
Q  313 aggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagt 362  Q
    ||||||||||||  ||||||| ||  ||||||||||||||||||||||||    
T  29334213 aggtggcatttagcatgggaatggatagttgtttcccaccatgggaaagt 29334262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 362
Target Start/End: Complemental strand, 30781025 - 30780984
Alignment:
Q  321 tttaaaatgggaaaggggagttgtttcccaccatgggaaagt 362  Q
    ||||| |||||||||| ||||||||||||| |||||||||||    
T  30781025 tttaacatgggaaaggagagttgtttcccatcatgggaaagt 30780984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 362
Target Start/End: Complemental strand, 35616824 - 35616775
Alignment:
Q  313 aggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagt 362  Q
    |||||||||||||  ||||||||| || || |||||||||||||||||||    
T  35616824 aggtggcatttaacttgggaaaggagacttctttcccaccatgggaaagt 35616775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 362
Target Start/End: Original strand, 43316356 - 43316405
Alignment:
Q  313 aggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagt 362  Q
    ||||||||||||  ||||||| ||  ||||||||||||||||||||||||    
T  43316356 aggtggcatttagcatgggaatggatagttgtttcccaccatgggaaagt 43316405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 362
Target Start/End: Original strand, 51987826 - 51987875
Alignment:
Q  313 aggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagt 362  Q
    |||||||||||||  ||||||||| || || |||||||||||||||||||    
T  51987826 aggtggcatttaatttgggaaaggagacttctttcccaccatgggaaagt 51987875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 314 - 362
Target Start/End: Complemental strand, 36272595 - 36272547
Alignment:
Q  314 ggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagt 362  Q
    |||||||||||  ||||||| ||| | ||||||||||||||||||||||    
T  36272595 ggtggcatttagcatgggaatgggaacttgtttcccaccatgggaaagt 36272547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 327 - 363
Target Start/End: Complemental strand, 48835132 - 48835096
Alignment:
Q  327 atgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    ||||||||||||| |||||| ||||||||||||||||    
T  48835132 atgggaaaggggaattgttttccaccatgggaaagtt 48835096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 312 - 361
Target Start/End: Original strand, 9142045 - 9142094
Alignment:
Q  312 taggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaag 361  Q
    |||||||||||||  ||||||||||| |||||||||||||||||||||||    
T  9142045 taggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaag 9142094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 327 - 363
Target Start/End: Original strand, 4789533 - 4789569
Alignment:
Q  327 atgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    |||||||||||||||||||||||||||||||||||||    
T  4789533 atgggaaaggggagttgtttcccaccatgggaaagtt 4789569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 314 - 363
Target Start/End: Complemental strand, 1970562 - 1970513
Alignment:
Q  314 ggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    |||||||||||  ||||||| || ||||||||||||||||||||||||||    
T  1970562 ggtggcatttagcatgggaatggagagttgtttcccaccatgggaaagtt 1970513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 314 - 361
Target Start/End: Complemental strand, 4555437 - 4555390
Alignment:
Q  314 ggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaag 361  Q
    |||||||||||  ||||||||||| |||||||||| ||||||||||||    
T  4555437 ggtggcatttagtatgggaaagggaagttgtttcctaccatgggaaag 4555390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 312 - 363
Target Start/End: Original strand, 8204118 - 8204169
Alignment:
Q  312 taggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    |||||| |||||||  ||||||||| ||||| ||||||||||||||||||||    
T  8204118 taggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagtt 8204169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 363
Target Start/End: Complemental strand, 4607185 - 4607135
Alignment:
Q  313 aggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    ||||||||||||  ||||||| || |||||||||||||||||| |||||||    
T  4607185 aggtggcatttagcatgggaatggagagttgtttcccaccatgagaaagtt 4607135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 327 - 361
Target Start/End: Complemental strand, 26712423 - 26712389
Alignment:
Q  327 atgggaaaggggagttgtttcccaccatgggaaag 361  Q
    ||||||||||| |||||||||||||||||||||||    
T  26712423 atgggaaagggaagttgtttcccaccatgggaaag 26712389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 327 - 361
Target Start/End: Complemental strand, 26982161 - 26982127
Alignment:
Q  327 atgggaaaggggagttgtttcccaccatgggaaag 361  Q
    ||||||||||| |||||||||||||||||||||||    
T  26982161 atgggaaagggaagttgtttcccaccatgggaaag 26982127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 363
Target Start/End: Complemental strand, 33002865 - 33002815
Alignment:
Q  313 aggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    ||||| |||||||  ||||||||| ||||| ||||||||||||||||||||    
T  33002865 aggtgtcatttaatttgggaaaggagagttctttcccaccatgggaaagtt 33002815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 363
Target Start/End: Complemental strand, 15184065 - 15184016
Alignment:
Q  314 ggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    |||| |||||||  ||||||||| ||||| ||||||||||||||||||||    
T  15184065 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagtt 15184016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 314 - 354
Target Start/End: Complemental strand, 473092 - 473052
Alignment:
Q  314 ggtggcatttaaaatgggaaaggggagttgtttcccaccat 354  Q
    |||||||||||| ||||||||||| ||| ||||||||||||    
T  473092 ggtggcatttaatatgggaaagggaagtcgtttcccaccat 473052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 314 - 362
Target Start/End: Complemental strand, 17767639 - 17767591
Alignment:
Q  314 ggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagt 362  Q
    ||||| |||||| ||||||||||   |||||||||||||||||||||||    
T  17767639 ggtgggatttaatatgggaaaggatcgttgtttcccaccatgggaaagt 17767591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 363
Target Start/End: Complemental strand, 36626681 - 36626629
Alignment:
Q  311 gtaggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    ||||||| |||||||  ||||||| | ||||| ||||||||||||||||||||    
T  36626681 gtaggtgccatttaatttgggaaatgagagttctttcccaccatgggaaagtt 36626629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 314 - 361
Target Start/End: Original strand, 43924490 - 43924537
Alignment:
Q  314 ggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaag 361  Q
    ||||||||||||  |||||||||| |||||||||||||||||||||||    
T  43924490 ggtggcatttaatttgggaaagggaagttgtttcccaccatgggaaag 43924537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 313 - 363
Target Start/End: Original strand, 43433810 - 43433860
Alignment:
Q  313 aggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    ||||||||||||| ||||||||||||| |  ||||||||||||||||||||    
T  43433810 aggtggcatttaacatgggaaaggggaatcatttcccaccatgggaaagtt 43433860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 314 - 363
Target Start/End: Original strand, 42345394 - 42345443
Alignment:
Q  314 ggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    |||||||||||  ||||||| || ||||||||||||||||||||||||||    
T  42345394 ggtggcatttagcatgggaatggagagttgtttcccaccatgggaaagtt 42345443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 312 - 363
Target Start/End: Original strand, 42914812 - 42914863
Alignment:
Q  312 taggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    |||||| |||||||  |||||||||||||| |||||||| ||||||||||||    
T  42914812 taggtgccatttaacctgggaaaggggagtagtttcccatcatgggaaagtt 42914863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 362
Target Start/End: Original strand, 61452 - 61502
Alignment:
Q  312 taggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagt 362  Q
    ||||||||||||||  ||||||||| || || |||||||||||||||||||    
T  61452 taggtggcatttaatttgggaaaggagacttctttcccaccatgggaaagt 61502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 363
Target Start/End: Complemental strand, 34992313 - 34992263
Alignment:
Q  313 aggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    ||||| |||||||  ||||||||| ||||| ||||||||||||||||||||    
T  34992313 aggtgccatttaatttgggaaaggagagttttttcccaccatgggaaagtt 34992263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 363
Target Start/End: Original strand, 41859309 - 41859359
Alignment:
Q  313 aggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    ||||| |||||||  ||||||||| ||||| ||||||||||||||||||||    
T  41859309 aggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagtt 41859359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 363
Target Start/End: Original strand, 7054090 - 7054139
Alignment:
Q  314 ggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    |||||||||||  ||||||| || ||||||||||||||||||| ||||||    
T  7054090 ggtggcatttagcatgggaatggagagttgtttcccaccatggaaaagtt 7054139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 363
Target Start/End: Complemental strand, 43925066 - 43925017
Alignment:
Q  314 ggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    |||||| |||||  |||||||||| ||||||||||||||||| |||||||    
T  43925066 ggtggcgtttaatttgggaaagggaagttgtttcccaccatgagaaagtt 43925017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 314 - 362
Target Start/End: Original strand, 1365829 - 1365877
Alignment:
Q  314 ggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagt 362  Q
    ||||||||||||  ||||||||| || || |||||||||||||||||||    
T  1365829 ggtggcatttaatttgggaaaggagacttctttcccaccatgggaaagt 1365877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 362
Target Start/End: Complemental strand, 13935105 - 13935053
Alignment:
Q  310 tgtaggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagt 362  Q
    |||||||||||||||  ||||||||||  |||||||| ||||||| |||||||    
T  13935105 tgtaggtggcatttagcatgggaaaggaaagttgttttccaccataggaaagt 13935053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 327 - 363
Target Start/End: Complemental strand, 27322622 - 27322586
Alignment:
Q  327 atgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    |||||||| |||||||||||||||| |||||||||||    
T  27322622 atgggaaatgggagttgtttcccacgatgggaaagtt 27322586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 327 - 363
Target Start/End: Complemental strand, 35840565 - 35840529
Alignment:
Q  327 atgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    ||||||||||| ||||||||||||| |||||||||||    
T  35840565 atgggaaagggaagttgtttcccacgatgggaaagtt 35840529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 327 - 363
Target Start/End: Original strand, 35943089 - 35943125
Alignment:
Q  327 atgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    ||||||||||| ||||||||||||||||||| |||||    
T  35943089 atgggaaagggaagttgtttcccaccatggggaagtt 35943125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 314 - 363
Target Start/End: Original strand, 43768026 - 43768075
Alignment:
Q  314 ggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    |||||||||||  ||||||| || ||||||||||||||||||||||||||    
T  43768026 ggtggcatttagcatgggaatggagagttgtttcccaccatgggaaagtt 43768075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 361
Target Start/End: Complemental strand, 38337526 - 38337478
Alignment:
Q  313 aggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaag 361  Q
    ||||||| |||||  |||||||||| |||||||||||||||||||||||    
T  38337526 aggtggcgtttaatttgggaaagggaagttgtttcccaccatgggaaag 38337478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 327 - 363
Target Start/End: Complemental strand, 49161843 - 49161807
Alignment:
Q  327 atgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    ||||||||||||| |||||||||||||||||||||||    
T  49161843 atgggaaaggggaattgtttcccaccatgggaaagtt 49161807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 312 - 363
Target Start/End: Complemental strand, 36750487 - 36750436
Alignment:
Q  312 taggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    |||||| |||||||  ||||||||| ||||| ||||||||||||||||||||    
T  36750487 taggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagtt 36750436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 314 - 361
Target Start/End: Original strand, 38336944 - 38336991
Alignment:
Q  314 ggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaag 361  Q
    ||||||||||||  |||| ||||| |||||||||||||||||||||||    
T  38336944 ggtggcatttaatttggggaagggaagttgtttcccaccatgggaaag 38336991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 327 - 362
Target Start/End: Complemental strand, 45501329 - 45501294
Alignment:
Q  327 atgggaaaggggagttgtttcccaccatgggaaagt 362  Q
    |||||||||||||||||||| |||||||||||||||    
T  45501329 atgggaaaggggagttgttttccaccatgggaaagt 45501294  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 327 - 363
Target Start/End: Complemental strand, 33455816 - 33455780
Alignment:
Q  327 atgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    ||||||||||||| |||||||||||||| ||||||||    
T  33455816 atgggaaaggggaattgtttcccaccataggaaagtt 33455780  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 327 - 363
Target Start/End: Original strand, 45297562 - 45297598
Alignment:
Q  327 atgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  45297562 atgggaaaggagagttgtttcccatcatgggaaagtt 45297598  T

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Target: scaffold2003 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold2003
Description:

Target: scaffold2003; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 327 - 362
Target Start/End: Complemental strand, 566 - 531
Alignment:
Q  327 atgggaaaggggagttgtttcccaccatgggaaagt 362  Q
    |||||||||||||||||||||||||||||| |||||    
T  566 atgggaaaggggagttgtttcccaccatggaaaagt 531  T

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Target: scaffold0311 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 363
Target Start/End: Complemental strand, 209 - 159
Alignment:
Q  313 aggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagtt 363  Q
    ||||| |||||||  ||||||||| ||||| ||||||||||||||||||||    
T  209 aggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagtt 159  T

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Target: scaffold0150 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 314 - 356
Target Start/End: Original strand, 14012 - 14054
Alignment:
Q  314 ggtggcatttaaaatgggaaaggggagttgtttcccaccatgg 356  Q
    ||||| |||||  ||||||||||||||||||||||||||||||    
T  14012 ggtgggatttagcatgggaaaggggagttgtttcccaccatgg 14054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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