View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21100_low_21 (Length: 343)
Name: NF21100_low_21
Description: NF21100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21100_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 16 - 324
Target Start/End: Complemental strand, 39732219 - 39731912
Alignment:
| Q |
16 |
atagaatctgttacttttacaaagtggtaaacgtaattgagaggcagttgacaaaatcaaatgcaacaaaactaaacaaatgttggacccactccaaaat |
115 |
Q |
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| T |
39732219 |
atagaatctgttacttttacaaagtggtaaacgtaattgagaggcagttgacaaaatcaaatgcaacaaaactaaacaaatgttggacccactccaaaat |
39732120 |
T |
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| Q |
116 |
cgtaaaagccatgtaaatgagctatcaacaaaaaacaagaatctataactttaannnnnnnnagtccatttctttatcaccctctcattgagtggtagat |
215 |
Q |
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| T |
39732119 |
cgtaaaagccatgtaaatgagctatcaacaaaaaacaagaatctataactttaa-tttttttagtccatttctttatcaccctctcattgagtggtagat |
39732021 |
T |
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| Q |
216 |
cttaggggcacgagagcatgcacattcttttctcttttgttttttcctccataaaataatggaaagttcaatnnnnnnnntaaatgtgattaatgaatga |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
39732020 |
cttaggggcacgagagcatgcacattcttttctcttttgttttttcctccataaaataatggaaagttcaataaaataaataaatgtgattaatgaatga |
39731921 |
T |
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| Q |
316 |
aggagattg |
324 |
Q |
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| T |
39731920 |
aggagattg |
39731912 |
T |
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