View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21100_low_22 (Length: 336)
Name: NF21100_low_22
Description: NF21100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21100_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 16 - 320
Target Start/End: Complemental strand, 6479971 - 6479667
Alignment:
| Q |
16 |
atagggtagtcaaatatatagaagatgaattcattcataaaggctgccgatgcatgtacaatgctatagatatttgtaacgcgcttcaatgtatcttggc |
115 |
Q |
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| T |
6479971 |
atagggtagttaaatatatagaagatgaattcattcataaaggctgccgatgcatgtacaatgttatagatatttgtaacgcgcttcaatatatcttggc |
6479872 |
T |
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| Q |
116 |
cactttgcttgcggagatcccatgaatcataatagagcttaaacattggattttaagaaaagaaataagattctgtatgtccaagaaatgtgtaagattt |
215 |
Q |
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| T |
6479871 |
caatttgcttgcggagatcccatgaatcataatagagcttaaacattggattttaagaaaagaaataagattttgtatatccaagaaatgtgtaagattt |
6479772 |
T |
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| Q |
216 |
aaaatttcacctcatcaactgctaatgaaaacggcttatatgaaagcgttaatactaaccataatcaacaagagtgacaggacttttgtcagattttgaa |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
6479771 |
aaaatttcacctcatcaactgctaatgaaaacggcttatataaaagcgttgatactaaccataatcaacaagagtgacatgatttttgtcagattttgaa |
6479672 |
T |
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| Q |
316 |
tgaac |
320 |
Q |
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||||| |
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| T |
6479671 |
tgaac |
6479667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 6489582 - 6489654
Alignment:
| Q |
16 |
atagggtagtcaaatatatagaagatgaattcattcataaaggctgccgatgcatgtacaatgctatagatat |
88 |
Q |
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| T |
6489582 |
ataggctagtcaaatatataaaaggtgaattcattcataaaggctgccgatacatgtacaatgttatagatat |
6489654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 90 - 246
Target Start/End: Original strand, 38702399 - 38702555
Alignment:
| Q |
90 |
tgtaacgcgcttcaatgtatcttggccactttgcttgcggagatcccatgaatcataatagagcttaaacattggattttaagaaaagaaataagattct |
189 |
Q |
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||||| |||||||||||||||||||||||||| ||| || ||||||| |||||| |||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
38702399 |
tgtaatgcgcttcaatgtatcttggccactttccttacgaagatcccctgaatcctaatagagtttaaacacgggattttaagaaaagaaataagattct |
38702498 |
T |
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| Q |
190 |
gtatgtccaagaaatgtgtaagatttaaaatttcacctcatcaactgctaatgaaaa |
246 |
Q |
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| T |
38702499 |
gcatgtccaagaaatctgtaacagttaaaatttcacctcctcagctactaatgaaaa |
38702555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 265 - 320
Target Start/End: Original strand, 38703065 - 38703120
Alignment:
| Q |
265 |
taatactaaccataatcaacaagagtgacaggacttttgtcagattttgaatgaac |
320 |
Q |
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| T |
38703065 |
taatactaaccataatcagcaacagtgacaggagttttgtcagatttagagtgaac |
38703120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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