View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21100_low_25 (Length: 302)
Name: NF21100_low_25
Description: NF21100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21100_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 283
Target Start/End: Original strand, 31264493 - 31264757
Alignment:
| Q |
19 |
tgacccatacactctaccatttttgctagagtgtactttgtttcttgaaacttagagaaagtatgaaaccctcatttaattccatacctatcttcatcca |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31264493 |
tgacccatacactctaccatttttgctagagtgtactttatttcttgaaacttagagaaagtatgaaaccctcatttaattccatacctatcttcatcca |
31264592 |
T |
|
| Q |
119 |
ttgtagaaatatgaaaattgaaatcctttaaaacccatannnnnnnnnnnnatagcatgagacatacatgaataattttctatatttgacaagcttcttc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31264593 |
ttgtagaaatatgaaaattgaaatcctttaaaacccatattttttgtttttatagcatgagacatacatgaataattttctatatttgacaagcttcttc |
31264692 |
T |
|
| Q |
219 |
attcaagttagtttcgttctcactatttctacacatgatttttgtgcagtccccacatttgaggc |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31264693 |
attcaagttagtttcgttctcactatttctacacatgatttttgtgcagtccccacatttgaggc |
31264757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 140
Target Start/End: Complemental strand, 22049544 - 22049424
Alignment:
| Q |
20 |
gacccatacactctaccatttttgctagagtgtactttgtttcttgaaacttagagaaagtatgaaaccctcatttaattccatacctatcttcatccat |
119 |
Q |
| |
|
|||||||||| |||||||||| |||| |||||||| ||||| |||||||||||||||||| ||||||| |||||| ||||||| ||| |||||||||||| |
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| T |
22049544 |
gacccatacattctaccatttctgctggagtgtaccttgttccttgaaacttagagaaagcatgaaactctcattcaattccaaaccaatcttcatccat |
22049445 |
T |
|
| Q |
120 |
tgtagaaatatgaaaattgaa |
140 |
Q |
| |
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|||||||| ||||| |||||| |
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| T |
22049444 |
tgtagaaaaatgaacattgaa |
22049424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 140
Target Start/End: Complemental strand, 44359929 - 44359809
Alignment:
| Q |
20 |
gacccatacactctaccatttttgctagagtgtactttgtttcttgaaacttagagaaagtatgaaaccctcatttaattccatacctatcttcatccat |
119 |
Q |
| |
|
|||||||||| |||||||||| |||| |||||||| ||||| |||||||||||||||||| ||||||| |||||| ||||||| ||| |||||||||||| |
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| T |
44359929 |
gacccatacattctaccatttctgctggagtgtaccttgttccttgaaacttagagaaagcatgaaactctcattcaattccaaaccaatcttcatccat |
44359830 |
T |
|
| Q |
120 |
tgtagaaatatgaaaattgaa |
140 |
Q |
| |
|
|||||||| ||||| |||||| |
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| T |
44359829 |
tgtagaaaaatgaacattgaa |
44359809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 5e-28; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 20 - 127
Target Start/End: Complemental strand, 13814694 - 13814587
Alignment:
| Q |
20 |
gacccatacactctaccatttttgctagagtgtactttgtttcttgaaacttagagaaagtatgaaaccctcatttaattccatacctatcttcatccat |
119 |
Q |
| |
|
||||| |||| |||||||||| |||| |||||||||||||| |||||||||||||||||| ||||||| | |||| ||||||| ||| |||||||||||| |
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|
| T |
13814694 |
gacccttacattctaccatttctgctggagtgtactttgttccttgaaacttagagaaagcatgaaactcccattcaattccaaaccaatcttcatccat |
13814595 |
T |
|
| Q |
120 |
tgtagaaa |
127 |
Q |
| |
|
|||||||| |
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|
| T |
13814594 |
tgtagaaa |
13814587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 20 - 124
Target Start/End: Original strand, 12212898 - 12213003
Alignment:
| Q |
20 |
gacccatacactctaccatttttgctagagtgtactttgtttcttgaaacttagagaaagtatg-aaaccctcatttaattccatacctatcttcatcca |
118 |
Q |
| |
|
|||||||||| |||||||||| |||| |||||||| ||||| |||||||||||||||||| ||| |||| | |||| ||||||| ||| ||||||||||| |
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|
| T |
12212898 |
gacccatacattctaccatttctgctggagtgtaccttgttccttgaaacttagagaaagcatgaaaactcgcattcaattccaaaccaatcttcatcca |
12212997 |
T |
|
| Q |
119 |
ttgtag |
124 |
Q |
| |
|
|||||| |
|
|
| T |
12212998 |
ttgtag |
12213003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 266
Target Start/End: Complemental strand, 13814526 - 13814446
Alignment:
| Q |
186 |
atgaataattttctatatttgacaagcttcttcattcaagttagtttcgttctcactatttctacacatgatttttgtgca |
266 |
Q |
| |
|
|||||||||||||||| |||||||| ||| ||||| | ||| |||| |||||||| ||| |||||||||| | |||||| |
|
|
| T |
13814526 |
atgaataattttctatctttgacaaactttatcatttcaattaatttccttctcactgtttatacacatgatatatgtgca |
13814446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 133
Target Start/End: Original strand, 22145081 - 22145194
Alignment:
| Q |
20 |
gacccatacactctaccatttttgctagagtgtactttgtttcttgaaacttagagaaagtatgaaaccctcatttaattccatacctatcttcatccat |
119 |
Q |
| |
|
||||||| || |||||||||| |||| || ||||| ||||| |||||||||||||||||| ||||||| | |||| ||||||| ||| |||||||||||| |
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|
| T |
22145081 |
gacccatgcattctaccatttctgctggactgtaccttgttccttgaaacttagagaaagcatgaaactcccattcaattccaaaccaatcttcatccat |
22145180 |
T |
|
| Q |
120 |
tgtagaaatatgaa |
133 |
Q |
| |
|
|||||||| ||||| |
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|
| T |
22145181 |
tgtagaaaaatgaa |
22145194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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