View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21100_low_27 (Length: 290)

Name: NF21100_low_27
Description: NF21100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21100_low_27
NF21100_low_27
[»] chr1 (1 HSPs)
chr1 (18-249)||(44331663-44331894)
[»] chr6 (3 HSPs)
chr6 (91-249)||(13409896-13410054)
chr6 (120-246)||(10554616-10554742)
chr6 (143-195)||(10029998-10030050)
[»] chr3 (3 HSPs)
chr3 (91-249)||(43490026-43490184)
chr3 (96-249)||(45013877-45014030)
chr3 (143-197)||(49103598-49103652)
[»] chr8 (1 HSPs)
chr8 (91-249)||(38653102-38653260)
[»] chr7 (2 HSPs)
chr7 (161-249)||(6568909-6568997)
chr7 (161-249)||(6583068-6583156)
[»] chr4 (1 HSPs)
chr4 (143-203)||(1726250-1726310)


Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 44331663 - 44331894
Alignment:
Q  18 aataatgggttgccggagaaacagaagatgttgaagtattcaccggaaaagttggtcttgttgcacttgctggaacattttcagggaagttgagtttcgc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44331663 aataatgggttgccggagaaacagaagatgttgaagtattcaccggaaaagttggtcttgttgcacttgctggaacattttcagggaagttgagtttcgc 44331762  T
Q  118 tctgtttcctctgaatcttaatgcagcttcatcgtaagctcttgctgcagcttctgcagtttcaaatgttccaagccatactcttgctgctttgtgtgga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44331763 tctgtttcctctgaatcttaatgcagcttcatcgtaagctcttgctgcagcttctgcagtttcaaatgttccaagccatactcttgctgctttgtgtgga 44331862  T
Q  218 tctcgaatttctgctgcccattttccccatgg 249  Q
    ||||||||||||||||||||||||||||||||    
T  44331863 tctcgaatttctgctgcccattttccccatgg 44331894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 103; Significance: 3e-51; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 91 - 249
Target Start/End: Complemental strand, 13410054 - 13409896
Alignment:
Q  91 aacattttcagggaagttgagtttcgctctgtttcctctgaatcttaatgcagcttcatcgtaagctcttgctgcagcttctgcagtttcaaatgttcca 190  Q
    |||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||| ||||| || |||||||||||||| || || ||||||||     
T  13410054 aacattttcagggaagttgagttttgctctgcttcctctgaatctcaatgcagcttcatcataagccctagctgcagcttctgctgtgtcgaatgttcct 13409955  T
Q  191 agccatactcttgctgctttgtgtggatctcgaatttctgctgcccattttccccatgg 249  Q
    ||||||||||||  |||||||||||||||||  ||||||||||||||||||||||||||    
T  13409954 agccatactctttgtgctttgtgtggatctcttatttctgctgcccattttccccatgg 13409896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 120 - 246
Target Start/End: Complemental strand, 10554742 - 10554616
Alignment:
Q  120 tgtttcctctgaatcttaatgcagcttcatcgtaagctcttgctgcagcttctgcagtttcaaatgttccaagccatactcttgctgctttgtgtggatc 219  Q
    |||||||| ||||||| |||||||||||||| |||||  | ||||||||||| || |||||||| || |||||||| ||||||||| |||| |  |||||    
T  10554742 tgtttcctttgaatctcaatgcagcttcatcataagcagtagctgcagcttcagctgtttcaaaggtgccaagccacactcttgctccttttttaggatc 10554643  T
Q  220 tcgaatttctgctgcccattttcccca 246  Q
    ||  ||||| ||||||||||| |||||    
T  10554642 tcttatttcagctgcccatttccccca 10554616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 10030050 - 10029998
Alignment:
Q  143 gcttcatcgtaagctcttgctgcagcttctgcagtttcaaatgttccaagcca 195  Q
    |||||||| ||||||||||||||  | || || ||||||||||||||||||||    
T  10030050 gcttcatcataagctcttgctgcttcctcagctgtttcaaatgttccaagcca 10029998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 91 - 249
Target Start/End: Original strand, 43490026 - 43490184
Alignment:
Q  91 aacattttcagggaagttgagtttcgctctgtttcctctgaatcttaatgcagcttcatcgtaagctcttgctgcagcttctgcagtttcaaatgttcca 190  Q
    ||||||||||||||| |||||||| ||| |||| ||||| || |  |  ||||||||||| || ||||| || || ||||| || ||||||||||||||     
T  43490026 aacattttcagggaaattgagtttggctttgttgcctctaaaacgaagagcagcttcatcatatgctctagcagctgcttcagctgtttcaaatgttcct 43490125  T
Q  191 agccatactcttgctgctttgtgtggatctcgaatttctgctgcccattttccccatgg 249  Q
    | |||||||||||||||||||  ||||||||  || |||||||||||||||||||||||    
T  43490126 aaccatactcttgctgctttgaatggatctcttatctctgctgcccattttccccatgg 43490184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 96 - 249
Target Start/End: Original strand, 45013877 - 45014030
Alignment:
Q  96 tttcagggaagttgagtttcgctctgtttcctctgaatcttaatgcagcttcatcgtaagctcttgctgcagcttctgcagtttcaaatgttccaagcca 195  Q
    ||||||| || ||||| || ||| || ||||| ||||||| | |||||||||||| || ||    |||||||| || || |||||||||||||| |||||    
T  45013877 tttcaggaaaattgagcttagctttgcttcctttgaatctgagtgcagcttcatcatatgcaacggctgcagcctcagccgtttcaaatgttcctagcca 45013976  T
Q  196 tactcttgctgctttgtgtggatctcgaatttctgctgcccattttccccatgg 249  Q
    ||| ||||| || || |  ||||| ||||| ||||| ||||| |||||||||||    
T  45013977 tacccttgccgccttcttcggatcacgaatctctgcagcccactttccccatgg 45014030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 197
Target Start/End: Original strand, 49103598 - 49103652
Alignment:
Q  143 gcttcatcgtaagctcttgctgcagcttctgcagtttcaaatgttccaagccata 197  Q
    ||||||||||| ||||| |||||| | |||||||||||||| || ||||||||||    
T  49103598 gcttcatcgtatgctctagctgcatcctctgcagtttcaaaagtaccaagccata 49103652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 91 - 249
Target Start/End: Original strand, 38653102 - 38653260
Alignment:
Q  91 aacattttcagggaagttgagtttcgctctgtttcctctgaatcttaatgcagcttcatcgtaagctcttgctgcagcttctgcagtttcaaatgttcca 190  Q
    |||||||||||||||||||||||| ||| |||||||||| || |  |||| ||||| ||| || ||| | |||||| |||| || ||||||||||| ||     
T  38653102 aacattttcagggaagttgagttttgctttgtttcctctaaaacgcaatgaagcttgatcataggctttagctgcatcttcagctgtttcaaatgtacct 38653201  T
Q  191 agccatactcttgctgctttgtgtggatctcgaatttctgctgcccattttccccatgg 249  Q
    | |||||||||||  ||||||   |||||||  || |||||||||||||||||||||||    
T  38653202 aaccatactcttgtagctttgaaaggatctcttatctctgctgcccattttccccatgg 38653260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 249
Target Start/End: Complemental strand, 6568997 - 6568909
Alignment:
Q  161 gctgcagcttctgcagtttcaaatgttccaagccatactcttgctgctttgtgtggatctcgaatttctgctgcccattttccccatgg 249  Q
    |||||| |||| || || ||||||||||| | ||| ||||| |||||||| | ||| || || ||||| ||||||||||||||||||||    
T  6568997 gctgcatcttcagctgtatcaaatgttcctaaccaaactctagctgctttttttgggtcacgtatttcagctgcccattttccccatgg 6568909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 249
Target Start/End: Complemental strand, 6583156 - 6583068
Alignment:
Q  161 gctgcagcttctgcagtttcaaatgttccaagccatactcttgctgctttgtgtggatctcgaatttctgctgcccattttccccatgg 249  Q
    |||||| |||| || || ||||||||||| | ||| ||||| |||||||| | ||| || || ||||| ||||||||||||||||||||    
T  6583156 gctgcatcttcagctgtgtcaaatgttcctaaccaaactctagctgctttttttgggtcacgtatttcagctgcccattttccccatgg 6583068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 1726310 - 1726250
Alignment:
Q  143 gcttcatcgtaagctcttgctgcagcttctgcagtttcaaatgttccaagccatactcttg 203  Q
    |||||||| || |||||||||||| ||||||| |||||||||||||| | ||||| |||||    
T  1726310 gcttcatcatatgctcttgctgcatcttctgctgtttcaaatgttcctaaccatattcttg 1726250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University