View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21100_low_28 (Length: 289)
Name: NF21100_low_28
Description: NF21100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21100_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 18 - 270
Target Start/End: Original strand, 23694272 - 23694524
Alignment:
| Q |
18 |
acatggagggaacttcaccatcctctacagcagatgatttctacttctcagccattcatgataaagaaatttttcgaatatctgaagagacatatgcaga |
117 |
Q |
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| T |
23694272 |
acatggagggaacttcaccatcctctacagcagatgatttctacttctcagccattcatgataaagaaatttttcgaatatctgaagagacatatgcaga |
23694371 |
T |
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| Q |
118 |
ggaattacaaatacaagaagcattattattttccactcttttgtcaaatactattatagatgtaaaaaatgaaatccaagtagtggatgcaaaagttgat |
217 |
Q |
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| T |
23694372 |
ggaattacaaatacaagaagcattattattttccactcttatgtcaaatactactatagatgtaaaaaatgaaatccaagtagtggatgcaaaagttgat |
23694471 |
T |
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| Q |
218 |
ctcaaacagaagcagaaagaggcttttgtaggtgaatcttcttcgtcgtcttc |
270 |
Q |
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| T |
23694472 |
ctcaaacagaagcagaaagaggcttttgtaggtgaatcttcttcgtcttcttc |
23694524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 73 - 265
Target Start/End: Complemental strand, 23701488 - 23701296
Alignment:
| Q |
73 |
tcatgataaagaaatttttcgaatatctgaagagacatatgcagaggaattacaaatacaagaagcattattattttccactcttttgtcaaatactatt |
172 |
Q |
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| T |
23701488 |
tcatgatgaagaaatttttcgattatgtgatgagacatatgcagaagaattacaaatacaagaagcattattattttccgctcttatgtcaaatactact |
23701389 |
T |
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| Q |
173 |
atagatgtaaaaaatgaaatccaagtagtggatgcaaaagttgatctcaaacagaagcagaaagaggcttttgtaggtgaatcttcttcgtcg |
265 |
Q |
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| T |
23701388 |
atagatgtaaaatatgaaatccaagaagtggatacaaaagttgatctcaaacagaagcagaagcaggcttttgtaggtgaatattctttgtcg |
23701296 |
T |
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