View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21100_low_31 (Length: 278)
Name: NF21100_low_31
Description: NF21100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21100_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 17 - 264
Target Start/End: Complemental strand, 32035110 - 32034862
Alignment:
| Q |
17 |
atgaaggtaagatcaacatgacaattttaaatattaaccgtaaaaccttcatgtatagatgcactcgatttaggtgatcactatgtattataattgactt |
116 |
Q |
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| T |
32035110 |
atgaaggtaagatcaacaagacaattttaaatattaactgtaaaaccttcatgtatagatgcactcgatttaggtgatcactatgtattagaattggctt |
32035011 |
T |
|
| Q |
117 |
cactcaaagcacaagaaaaataaaactttttaagatagagaaaaagataaattattaatatc-atatttgtaaaactccgagtattttttagtttttata |
215 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
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| T |
32035010 |
cactcaaagtacaagaaaaataaaactttttaagatagagaaaaagataaattattaatatctatatttgtaaaactccgagtattttttagttttcata |
32034911 |
T |
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| Q |
216 |
aaagatgcacttannnnnnncttaggaaattactatttcattcaaattg |
264 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
32034910 |
aaagatgcacttatttttttcttaggaaattactatttcattcaaattg |
32034862 |
T |
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