View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21100_low_34 (Length: 253)
Name: NF21100_low_34
Description: NF21100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21100_low_34 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 5 - 253
Target Start/End: Original strand, 36808090 - 36808345
Alignment:
| Q |
5 |
gagagagaagaaagagagttcaatgtgattttaacttgttttatatccaaaaccatgttgtcttgaagaatagtcgtaaaatcaccgcctttgagttact |
104 |
Q |
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| T |
36808090 |
gagagagaagaaagcgagttcaatgtgattttaacttgttttatatccaaaaccatgttgtcttgaagaatagtcgtaaaatcaccgcctttgagttaca |
36808189 |
T |
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| Q |
105 |
actcaaaaattattgttaaggacaacaaattacattacagtacagaaaatcaaagattatatttatgcaggatggtgtcatccaagatcagcctaccaaa |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36808190 |
actcaaaaattattgttaaggacaacaaattacattacagtacagaaaattaaagattatatttatgcaggatggtgtcatccaagatcagcctagcaaa |
36808289 |
T |
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| Q |
205 |
ataggaattaggggagaaacg-------tcgggagaaacagagaatggaacagaac |
253 |
Q |
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||||||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
36808290 |
ataggaattaggggagaaacggctgaatttgggagaaacagagaatggaacagaac |
36808345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 36526307 - 36526268
Alignment:
| Q |
5 |
gagagagaagaaagagagttcaatgtgattttaacttgtt |
44 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
36526307 |
gagagagaagaaagagagttcaatgtgattttaacttgtt |
36526268 |
T |
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