View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21100_low_39 (Length: 247)
Name: NF21100_low_39
Description: NF21100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21100_low_39 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 46699846 - 46700076
Alignment:
| Q |
1 |
ttcaatactacatagaaattccaaatattcattatatgtgatattgttcaaattttctattaggaggtaaaacaaatcagtgcactcataagattgagcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46699846 |
ttcaatactacatagaaattccaaatattcattatatgtgatatcgttcaaattttctattaagaggtaaaacaaatcagtgcactcataagattgagcc |
46699945 |
T |
|
| Q |
101 |
ttgcttagtcaaacctcacggatatgctcatgccgagttgtgaaatatgcaactaaagcagtgtcggaacatgaccaatggagggtttacatagagccat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46699946 |
ttgcttagtcaaacctcacggatatgctcatgccgagttgtgaaatatgcaactaaagcagtgtcggaacatgaccaatggagggtttacatagagccat |
46700045 |
T |
|
| Q |
201 |
cttgttcatagcagagaaattctggagaaag |
231 |
Q |
| |
|
| ||||||||||||||||||||| ||||||| |
|
|
| T |
46700046 |
cctgttcatagcagagaaattctagagaaag |
46700076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 189
Target Start/End: Complemental strand, 46701881 - 46701836
Alignment:
| Q |
144 |
aatatgcaactaaagcagtgtcggaacatgaccaatggagggttta |
189 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
46701881 |
aatacgcaactaaagcagtgtcggaacaagaccattggagggttta |
46701836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University