View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21100_low_4 (Length: 560)
Name: NF21100_low_4
Description: NF21100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21100_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 406; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 9 - 542
Target Start/End: Complemental strand, 35354529 - 35353994
Alignment:
| Q |
9 |
gaacaatatttgatcatccctgcaaatgccacacagtcaaaatcttaacatagattaatgtttaatagaaagagtattatttaaagggnnnnnnnnnnnn |
108 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35354529 |
gaacaatatttgatcatccctgcaaatgccaaacagtcaaaatcttaacatagattaatgtttaatagaaaaagtattatttaaagggaaaataaaaaaa |
35354430 |
T |
|
| Q |
109 |
nn-----ttggaactaaccaattggtttctctatcaacttgttcgaattcaaggcctttgtcaacaatcttgctttttcctttagcagtttggtaacgtg |
203 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35354429 |
aaaaaaattggaactaaccaattggtttctctatcaacttgttcgaattcaaggcctttgtcaacaatcttgctttttcctttagcagtttggtaacgtg |
35354330 |
T |
|
| Q |
204 |
aaatagaaatccaaatctggttgtgtagcattctgatcaacataaaaggaaatatgacatggtacactggatccctttcaccccatatgaaagagtacat |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35354329 |
aaatagaaatccaaatctggttgtgtagcattctgatcaacataaaaggaaatatgacatggtacactggatccctttcaccccatatgaaagagtacat |
35354230 |
T |
|
| Q |
304 |
gctatgagcaatccacgggcttagaatcatgaacttaatttatgtccataaccaagtcacatcaaagacaaagacaaagacagagaataatatgttagtc |
403 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
35354229 |
gctatgagcaatccacgggcttagaatcatgaacttaatttatgtccataaccaagtcacatcaaagacaaa------gacagagaataatatgttagtc |
35354136 |
T |
|
| Q |
404 |
aatatcaaaacattactatatgtttcaaaattcatgctaaatatatgaactataagcgacaaacaaaaacttcatcaaaaaattaaagtaaatagnnnnn |
503 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
35354135 |
aatatcaaaacattactatatgtttcaaaattcatgctaaatatatgaactataagcgacaaacaaaaactttatcaaaaaattaaagtaaatagttatt |
35354036 |
T |
|
| Q |
504 |
nngtcataaaaatatttttgt---aatgacaaatgcagtatc |
542 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |
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|
| T |
35354035 |
ttttcataaaaatatttttgtaaaaatgacaaatgcagtatc |
35353994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 111 - 355
Target Start/End: Complemental strand, 35369456 - 35369212
Alignment:
| Q |
111 |
ttggaactaaccaattggtttctctatcaacttgttcgaattcaaggcctttgtcaacaatcttgctttttcctttagcagtttggtaacgtgaaataga |
210 |
Q |
| |
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|||||| ||||||||||||||||||||| |||||||| |||||||||| |||||||||||| |||||||| ||| ||||||||| || ||||| ||||| |
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|
| T |
35369456 |
ttggaattaaccaattggtttctctatcgacttgttcaaattcaaggcttttgtcaacaattttgcttttgcctctagcagtttcatatcgtgagataga |
35369357 |
T |
|
| Q |
211 |
aatccaaatctggttgtgtagcattctgatcaacataaaaggaaatatgacatggtacactggatccctttcaccccatatgaaagagtacatgctatga |
310 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||| ||||||||| |||||| || | | ||| ||||||||| |||||||||||||||| ||||| || |
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|
| T |
35369356 |
aatccaaatctgattgtgtagcattctgaccaatataaaaggacatatgagatattgtattgggtccctttcaacccatatgaaagagtatatgctgtgg |
35369257 |
T |
|
| Q |
311 |
gcaatccacgggcttagaatcatgaacttaatttatgtccataac |
355 |
Q |
| |
|
||||||| ||| ||||||||| |||||||||| |||||||||| |
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|
| T |
35369256 |
ccaatccatgggattagaatcacgaacttaattagtgtccataac |
35369212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 128 - 349
Target Start/End: Complemental strand, 35378323 - 35378102
Alignment:
| Q |
128 |
gtttctctatcaacttgttcgaattcaaggcctttgtcaacaatcttgctttttcctttagcagtttggtaacgtgaaatagaaatccaaatctggttgt |
227 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||| || |||| |||||||||||||| || ||||| | |||| ||||||| || |||| |
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|
| T |
35378323 |
gtttctctgtcgacttgttcgaattcaaggcctttgtcaacaattctgtttttgcctttagcagtttgatagcgtgagacagaagtccaaatttgattgt |
35378224 |
T |
|
| Q |
228 |
gtagcattctgatcaacataaaaggaaatatgacatggtacactggatccctttcaccccatatgaaagagtacatgctatgagcaatccacgggcttag |
327 |
Q |
| |
|
|||||||||||| ||| |||||||||||||| || ||| ||||| |||||||||||||||||||||| ||| ||||||||||||||||| ||| ||| |
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| T |
35378223 |
gtagcattctgaccaatgcaaaaggaaatatgatatagtatactgggtccctttcaccccatatgaaagtgtatatgctatgagcaatccatgggattac |
35378124 |
T |
|
| Q |
328 |
aatcatgaacttaatttatgtc |
349 |
Q |
| |
|
||||| |||||| | ||||||| |
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|
| T |
35378123 |
aatcacgaactttaattatgtc |
35378102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 106; Significance: 9e-53; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 119 - 340
Target Start/End: Complemental strand, 19683783 - 19683562
Alignment:
| Q |
119 |
aaccaattggtttctctatcaacttgttcgaattcaaggcctttgtcaacaatcttgctttttcctttagcagtttggtaacgtgaaatagaaatccaaa |
218 |
Q |
| |
|
||||||||||||||||| || ||||| |||||||| ||||||||||||||||| | ||||||||||||||||||||||| ||||| ||||||||||| | |
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|
| T |
19683783 |
aaccaattggtttctctgtcgacttggtcgaattccaggcctttgtcaacaattcttctttttcctttagcagtttggtagcgtgagatagaaatccata |
19683684 |
T |
|
| Q |
219 |
tctggttgtgtagcattctgatcaacataaaaggaaatatgacatggtacactggatccctttcaccccatatgaaagagtacatgctatgagcaatcca |
318 |
Q |
| |
|
|||| || ||||||||||||| ||| ||| |||| ||||||| || ||| ||| || | ||| ||||||| |||||||| ||||||||||||||||| |
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| T |
19683683 |
tctgattatgtagcattctgaccaatatataagggaatatgagatagtaggttgggtctcgttccacccatataaaagagtatatgctatgagcaatcca |
19683584 |
T |
|
| Q |
319 |
cgggcttagaatcatgaactta |
340 |
Q |
| |
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|||||||||||||| ||||||| |
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| T |
19683583 |
cgggcttagaatcacgaactta |
19683562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 119 - 338
Target Start/End: Original strand, 19632560 - 19632779
Alignment:
| Q |
119 |
aaccaattggtttctctatcaacttgttcgaattcaaggcctttgtcaacaatcttgctttttcctttagcagtttggtaacgtgaaatagaaatccaaa |
218 |
Q |
| |
|
||||| ||||||||||| || |||||||||||||| |||| |||||||||||| || |||| |||||||||||||| || ||||| ||||||||||| | |
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|
| T |
19632560 |
aaccagttggtttctctgtcgacttgttcgaattctaggcatttgtcaacaattctgtttttgcctttagcagtttgatagcgtgagatagaaatccaga |
19632659 |
T |
|
| Q |
219 |
tctggttgtgtagcattctgatcaacataaaaggaaatatgacatggtacactggatccctttcaccccatatgaaagagtacatgctatgagcaatcca |
318 |
Q |
| |
|
||||| ||||||||||||| | |||||| |||||||||||| || ||| ||| ||| ||| |||||||||||||||| ||||||||||||||||| |
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|
| T |
19632660 |
tctggctgtgtagcattctcacaaacatataaggaaatatgatatagtatgatgggtcctgttccacccatatgaaagagtatatgctatgagcaatcca |
19632759 |
T |
|
| Q |
319 |
cgggcttagaatcatgaact |
338 |
Q |
| |
|
|| |||||||||| ||||| |
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|
| T |
19632760 |
tggacttagaatcacgaact |
19632779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 9 - 56
Target Start/End: Complemental strand, 19684095 - 19684048
Alignment:
| Q |
9 |
gaacaatatttgatcatccctgcaaatgccacacagtcaaaatcttaa |
56 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| | |||||||||| |
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|
| T |
19684095 |
gaacaatatttgatcatccctgcaaatgtcacacaatgaaaatcttaa |
19684048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 10 - 56
Target Start/End: Original strand, 19630703 - 19630749
Alignment:
| Q |
10 |
aacaatatttgatcatccctgcaaatgccacacagtcaaaatcttaa |
56 |
Q |
| |
|
||||||||||||||||||||||||||| |||| | | |||||||||| |
|
|
| T |
19630703 |
aacaatatttgatcatccctgcaaatgtcacataatgaaaatcttaa |
19630749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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