View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21100_low_41 (Length: 240)
Name: NF21100_low_41
Description: NF21100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21100_low_41 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 5 - 240
Target Start/End: Original strand, 4132500 - 4132735
Alignment:
| Q |
5 |
gatcaaattctgccatcatatgaaatactccctcactctatatatgcaatccacgccgatttcaattattctccaggactccacaacagttaaaactgct |
104 |
Q |
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| T |
4132500 |
gatcaaattctgccatgatatgaaatactccctcactctatatatgcaatccacgccgatttcaattattctccaggactccacaacagttaaaactgct |
4132599 |
T |
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| Q |
105 |
agtattgaaaactcagctaccttgcaaataaaatacgcccacacactagaaatctgtagttatgcagagaaattgagcagagaaaacagaacgaactaaa |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
4132600 |
agtattgaaaactcagctaccttgcaaataaaatacgcccacacactagaaatctgtagttatgcagagaaattgagcagagaaaacagaacgaactaca |
4132699 |
T |
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| Q |
205 |
atcacaaaatgataagctagctacttccaattctca |
240 |
Q |
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||| |||||||| ||||||||||||||||||||||| |
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| T |
4132700 |
atcgcaaaatgaaaagctagctacttccaattctca |
4132735 |
T |
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