View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21100_low_5 (Length: 541)

Name: NF21100_low_5
Description: NF21100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21100_low_5
NF21100_low_5
[»] chr2 (7 HSPs)
chr2 (104-469)||(36338650-36339032)
chr2 (21-109)||(36338535-36338623)
chr2 (273-388)||(27648486-27648601)
chr2 (470-530)||(36339130-36339187)
chr2 (387-427)||(44686164-44686204)
chr2 (430-464)||(27648394-27648428)
chr2 (430-464)||(44686218-44686252)
[»] chr6 (2 HSPs)
chr6 (273-415)||(353107-353256)
chr6 (281-369)||(14351387-14351473)
[»] chr3 (3 HSPs)
chr3 (273-421)||(53837413-53837568)
chr3 (273-390)||(53833815-53833932)
chr3 (430-465)||(24734349-24734384)
[»] chr1 (1 HSPs)
chr1 (273-390)||(47833942-47834059)
[»] chr5 (4 HSPs)
chr5 (258-391)||(33827629-33827762)
chr5 (273-338)||(23755639-23755704)
chr5 (273-338)||(23821095-23821160)
chr5 (273-338)||(23687654-23687719)
[»] chr4 (1 HSPs)
chr4 (336-391)||(54572992-54573047)
[»] chr7 (3 HSPs)
chr7 (430-465)||(4648283-4648318)
chr7 (256-350)||(17001734-17001826)
chr7 (433-465)||(38787113-38787145)


Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 104 - 469
Target Start/End: Original strand, 36338650 - 36339032
Alignment:
Q  104 aaaaaagggggtcacaaattgggtgaacagagaaggatcaaaaagagcaaccacttgaagtagaatataagtctttcgcaactgaaaataatgcatgttc 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36338650 aaaaaagggggtcacaaattgggtgaacagagaaggatcaaaaagagcaaccacttgaagtagaatataagtctttcgcaactgaaaataatgcatgttc 36338749  T
Q  204 actagaatcaatcttgataagaactgaattcaacgagattcctcaaggaataaattgttggaaaaatacgacatagaattattataaggtaataaacaac 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||| |    
T  36338750 actagaatcaatcttgataagaactgaattcaacgagattcctcaagaaataaattgttggaaaaataccacatagaattattataaggtaatagacagc 36338849  T
Q  304 aagaattattagcatcaaattaatagaactctaaatacaatagaatagagaatatgtaaacttatcaaatattgattgaggcgtgcac------cgggct 397  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||      | || |    
T  36338850 aagaattattagcatcaaattaatagaactctaaatacaatagaatagagaatatgtaaacttatcgaatattgactgaggcgtgcacgaagcactggtt 36338949  T
Q  398 taagagtatttcgccacctcggataggttac----tg-------tctcatagctagtactctccaggatacaacagtcagttc 469  Q
    |||||||||||||||| |||| |||||||||    ||       |||| | ||||||||||||||||||||||||||||||||    
T  36338950 taagagtatttcgccatctcgaataggttacccgatgcagtagatctcgtggctagtactctccaggatacaacagtcagttc 36339032  T

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Target: chr2; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 21 - 109
Target Start/End: Original strand, 36338535 - 36338623
Alignment:
Q  21 aaggtctttgacatgtgccaaaaatttgactagagtatataatcttatcttgcaataatattatattggaaagttactgctagaaaaaa 109  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  36338535 aaggtctttgacatgtgtcaaaaatttgactaaagtatataatcttatcttgcagtaatattatattggaaagttactgctagaaaaaa 36338623  T

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Target: chr2; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 273 - 388
Target Start/End: Complemental strand, 27648601 - 27648486
Alignment:
Q  273 gacatagaattattataaggtaataaacaacaagaattattagcatcaaattaatagaactctaaatacaatagaatagagaatatgtaaacttatcaaa 372  Q
    |||||| |||||||||||||||||||  |||||||| ||||||||||||||||||||| ||||||||| |||||||||||||| | ||||||||||| |     
T  27648601 gacatataattattataaggtaataagtaacaagaaatattagcatcaaattaatagagctctaaatataatagaatagagaacaagtaaacttatcgat 27648502  T
Q  373 tattgattgaggcgtg 388  Q
    ||||||||||||||||    
T  27648501 tattgattgaggcgtg 27648486  T

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Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 470 - 530
Target Start/End: Original strand, 36339130 - 36339187
Alignment:
Q  470 aagaagagatgaaagcatctaacaagtttgttctctctcaatgtaacttacgtatccctat 530  Q
    |||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||    
T  36339130 aagaagagatgaaagcatctaacaa---tgttctctctcaatgtaacttacgtatccctat 36339187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 427
Target Start/End: Original strand, 44686164 - 44686204
Alignment:
Q  387 tgcaccgggcttaagagtatttcgccacctcggataggtta 427  Q
    ||||| |||||||||||||||||||||||||||||| ||||    
T  44686164 tgcactgggcttaagagtatttcgccacctcggataagtta 44686204  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 430 - 464
Target Start/End: Complemental strand, 27648428 - 27648394
Alignment:
Q  430 gtctcatagctagtactctccaggatacaacagtc 464  Q
    |||||||||||| ||||||||||||||||||||||    
T  27648428 gtctcatagctaatactctccaggatacaacagtc 27648394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 430 - 464
Target Start/End: Original strand, 44686218 - 44686252
Alignment:
Q  430 gtctcatagctagtactctccaggatacaacagtc 464  Q
    |||||||||||| ||||||||||||||||||||||    
T  44686218 gtctcatagctaatactctccaggatacaacagtc 44686252  T

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Target: chr6 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 273 - 415
Target Start/End: Complemental strand, 353256 - 353107
Alignment:
Q  273 gacatagaattattataaggtaataaacaacaagaattattagcatcaaattaatagaactctaaatacaatagaatagagaatatgtaaacttatcaaa 372  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||| |     
T  353256 gacatagaattattataaggtaataaacaacaagaaatattagcatcaaattaatagaattctaaatacaatagaatagagaataagtaaactcatcgat 353157  T
Q  373 tattgattgaggcgt-------gcaccgggcttaagagtatttcgccacc 415  Q
    |||||| ||||||||       |||| |||||||||||||||||||||||    
T  353156 tattgactgaggcgtgcacgaagcactgggcttaagagtatttcgccacc 353107  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 281 - 369
Target Start/End: Complemental strand, 14351473 - 14351387
Alignment:
Q  281 attattataaggtaataaacaacaagaattattagcatcaaattaatagaactctaaatacaatagaatagagaatatgtaaacttatc 369  Q
    |||||||||| ||||| ||||||||||| |||||| ||| | |||||| || ||||||| ||||||| |||||||||  ||||||||||    
T  14351473 attattataaagtaattaacaacaagaa-tattagtatc-atttaatacaaatctaaatgcaatagagtagagaataaataaacttatc 14351387  T

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Target: chr3 (Bit Score: 78; Significance: 4e-36; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 273 - 421
Target Start/End: Original strand, 53837413 - 53837568
Alignment:
Q  273 gacatagaattattataaggtaataaacaacaagaattattagcatcaaattaatagaactctaaatacaatagaatagagaatatgtaaacttatcaaa 372  Q
    |||||| ||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||| | |||||||||||||| | ||||||||||| |     
T  53837413 gacataaaattattataaggtaataagcaataagaaatattagcatcaaattaatagaactctaaacataatagaatagagaacaagtaaacttatcgat 53837512  T
Q  373 tattgattgaggcgtgc-------accgggcttaagagtatttcgccacctcggat 421  Q
    |||||| ||||||||||       |  |||||||||||||||||||||||||||||    
T  53837513 tattgactgaggcgtgcatgaagtattgggcttaagagtatttcgccacctcggat 53837568  T

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Target: chr3; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 273 - 390
Target Start/End: Original strand, 53833815 - 53833932
Alignment:
Q  273 gacatagaattattataaggtaataaacaacaagaattattagcatcaaattaatagaactctaaatacaatagaatagagaatatgtaaacttatcaaa 372  Q
    |||||||||||||||||||||||||| ||| ||||| ||||| ||||||||||||||||||||||||| |||| ||||||||| |  |||||||||| |     
T  53833815 gacatagaattattataaggtaataagcaataagaaatattaacatcaaattaatagaactctaaatataatataatagagaacaactaaacttatcgat 53833914  T
Q  373 tattgattgaggcgtgca 390  Q
    ||||| ||||||||||||    
T  53833915 tattggttgaggcgtgca 53833932  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 430 - 465
Target Start/End: Original strand, 24734349 - 24734384
Alignment:
Q  430 gtctcatagctagtactctccaggatacaacagtca 465  Q
    |||||||||||| |||||||||||||||||||||||    
T  24734349 gtctcatagctaatactctccaggatacaacagtca 24734384  T

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Target: chr1 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 273 - 390
Target Start/End: Complemental strand, 47834059 - 47833942
Alignment:
Q  273 gacatagaattattataaggtaataaacaacaagaattattagcatcaaattaatagaactctaaatacaatagaatagagaatatgtaaacttatcaaa 372  Q
    ||||||||||||||||||||||||||  ||| |||| ||||||||||||||||||||| ||||||||| |||||||||||||| | ||||||||||| |     
T  47834059 gacatagaattattataaggtaataagtaacgagaaatattagcatcaaattaatagatctctaaatataatagaatagagaacaagtaaacttatcgat 47833960  T
Q  373 tattgattgaggcgtgca 390  Q
    |||||| |||||| ||||    
T  47833959 tattgactgaggcatgca 47833942  T

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Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 258 - 391
Target Start/End: Complemental strand, 33827762 - 33827629
Alignment:
Q  258 ttgttggaaaaatacgacatagaattattataaggtaataaacaacaagaattattagcatcaaattaatagaactctaaatacaatagaatagagaata 357  Q
    |||| ||||||||  |||| |||| ||||||||||||||||  || ||||| ||||||||||||||||||||||||||||||| |||||||||||||| |    
T  33827762 ttgtaggaaaaattagacagagaaatattataaggtaataagtaataagaaatattagcatcaaattaatagaactctaaatataatagaatagagaaca 33827663  T
Q  358 tgtaaacttatcaaatattgattgaggcgtgcac 391  Q
     ||||| |||||    ||||| ||||||||||||    
T  33827662 agtaaatttatcggtcattgactgaggcgtgcac 33827629  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 273 - 338
Target Start/End: Original strand, 23755639 - 23755704
Alignment:
Q  273 gacatagaattattataaggtaataaacaacaagaattattagcatcaaattaatagaactctaaa 338  Q
    ||||||||||||||| || || |||||||||||||||||| || |||||||||||| |||||||||    
T  23755639 gacatagaattattaaaaagtgataaacaacaagaattatcagtatcaaattaatacaactctaaa 23755704  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 273 - 338
Target Start/End: Original strand, 23821095 - 23821160
Alignment:
Q  273 gacatagaattattataaggtaataaacaacaagaattattagcatcaaattaatagaactctaaa 338  Q
    ||||||||||||||| || || |||||||||||||||||| || |||||||||||| |||||||||    
T  23821095 gacatagaattattaaaaagtgataaacaacaagaattatcagtatcaaattaatacaactctaaa 23821160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 273 - 338
Target Start/End: Original strand, 23687654 - 23687719
Alignment:
Q  273 gacatagaattattataaggtaataaacaacaagaattattagcatcaaattaatagaactctaaa 338  Q
    ||||||||||||||| || || |||||||| ||||| ||| || |||||||||||| |||||||||    
T  23687654 gacatagaattattacaaagtgataaacaataagaaatatcagtatcaaattaatacaactctaaa 23687719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 336 - 391
Target Start/End: Complemental strand, 54573047 - 54572992
Alignment:
Q  336 aaatacaatagaatagagaatatgtaaacttatcaaatattgattgaggcgtgcac 391  Q
    |||||||||||||||||||||| ||||||||||| | |||||| ||||||||||||    
T  54573047 aaatacaatagaatagagaataagtaaacttatcgattattgactgaggcgtgcac 54572992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 430 - 465
Target Start/End: Original strand, 4648283 - 4648318
Alignment:
Q  430 gtctcatagctagtactctccaggatacaacagtca 465  Q
    ||||||||||||||||||| ||||||||||||||||    
T  4648283 gtctcatagctagtactcttcaggatacaacagtca 4648318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 350
Target Start/End: Original strand, 17001734 - 17001826
Alignment:
Q  256 aattgttggaaaaatacgacatagaattattataaggtaataaacaacaagaattattagcatcaaattaatagaactctaaatacaatagaata 350  Q
    |||||||| ||||||  ||||||  |||||||| | ||||||||||||||||| ||| |  |||||||||||| || |||||||| |||| ||||    
T  17001734 aattgttgaaaaaattagacata--attattatgaagtaataaacaacaagaaatatcattatcaaattaatacaaatctaaataaaataaaata 17001826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 433 - 465
Target Start/End: Complemental strand, 38787145 - 38787113
Alignment:
Q  433 tcatagctagtactctccaggatacaacagtca 465  Q
    |||||| ||||||||||||||||||||||||||    
T  38787145 tcatagttagtactctccaggatacaacagtca 38787113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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