View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21100_low_54 (Length: 206)
Name: NF21100_low_54
Description: NF21100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21100_low_54 |
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Alignment Details
Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 105 - 189
Target Start/End: Original strand, 34885063 - 34885147
Alignment:
| Q |
105 |
atactgtcatcttccaatttgttcctcatcttttcactaaccattaataatttcatcttcaacttgtcttgcttccatcgttaat |
189 |
Q |
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| T |
34885063 |
atactgtcatcttccaatttgttcctcatcttttcactaaccattaataatttcatcttcaacttgtcttgcttccatctttaat |
34885147 |
T |
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Target: chr7 (Bit Score: 77; Significance: 6e-36; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 105 - 189
Target Start/End: Complemental strand, 37005409 - 37005325
Alignment:
| Q |
105 |
atactgtcatcttccaatttgttcctcatcttttcactaaccattaataatttcatcttcaacttgtcttgcttccatcgttaat |
189 |
Q |
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| T |
37005409 |
atactgtcatcttccaatttgttcctcatcttttcactaaccattaataatttcatcttcaacttgtcttgtttccatcattaat |
37005325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 105 - 189
Target Start/End: Original strand, 43406533 - 43406617
Alignment:
| Q |
105 |
atactgtcatcttccaatttgttcctcatcttttcactaaccattaataatttcatcttcaacttgtcttgcttccatcgttaat |
189 |
Q |
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| T |
43406533 |
atactgacatcttccaatttgttcctcatcttttcactaaccattaataatttcatcttcaacttgtcttgcttccatcattaat |
43406617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 6e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 109 - 189
Target Start/End: Original strand, 49128663 - 49128743
Alignment:
| Q |
109 |
tgtcatcttccaatttgttcctcatcttttcactaaccattaataatttcatcttcaacttgtcttgcttccatcgttaat |
189 |
Q |
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| T |
49128663 |
tgtcatcttccaatttgttcctcatcttttcactaaccattaataatttcatcttcaacttgtcttgcttccatcattaat |
49128743 |
T |
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