View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21100_low_8 (Length: 503)
Name: NF21100_low_8
Description: NF21100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21100_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 19 - 484
Target Start/End: Original strand, 49064369 - 49064833
Alignment:
| Q |
19 |
tatcaatgtgatgattgcgtaaatgcgggatttcggtaacacagagggagaattcatttgaaagaaaaaggtagtataagatgcaaagggaaacgtcaac |
118 |
Q |
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| T |
49064369 |
tatcaatgtgatgattgcgtaaatgcgggatttcggtaacac-gagggagaattcatttgaaagaaaaaggtagtataagatgcaaagggaaacgtcaac |
49064467 |
T |
|
| Q |
119 |
aacgaatggggacatggtgtccttgctgatagacgtttaagtacataagaagtttgtttggtattggtaacattcatgtacatgacaaaccataatgttt |
218 |
Q |
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| T |
49064468 |
aacgaatggggacatggtgtccttgctgatagacgtttaagtaaataagaagtttgtttggtattggtaacattcatgtacatgacaaaccataatgttt |
49064567 |
T |
|
| Q |
219 |
ggctctgtctccnnnnnnnatcatgcgtgattgcatcacttatttttggtcctcttgatacgcccaaaggccaacaccaaacgataccttattgctcaat |
318 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
49064568 |
ggctctgtctcctttttttatcatgcgtgattgcatcacttatttttggtcctcttgatacgcccaaaggccaaaaccaaacgataccttattgctcaat |
49064667 |
T |
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| Q |
319 |
tccaagactataatgcctcaaatacaatatatgtctgtctctatacgagcacataccacatgcctcatttaaattgttgatgttgatgatagaaacactc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49064668 |
tccaagactataatgcctcaaatacaatatatgtctgtctctatacgagcacataccacatgcctcatttaaattgttgatgttgatgatagaaacactc |
49064767 |
T |
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| Q |
419 |
gactactacttgtttgtgttgtgggccatttttatcaatgcatgagtctttgtctatccagccacc |
484 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49064768 |
gactactacttgtttgtgttgtgggccatttttatcaatgcatgagtctttgtctatccagccacc |
49064833 |
T |
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