View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21101_high_5 (Length: 232)
Name: NF21101_high_5
Description: NF21101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21101_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 9743441 - 9743236
Alignment:
| Q |
18 |
gcaaagttggaagtgtggaaggagttggtggtgttgaagttggaggattcctaggttgttgtgttactggacgaggtggttgtccagaaggagtcagagt |
117 |
Q |
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| T |
9743441 |
gcaaagttggaagtgttgaaggagttggtggtgttgaagttggaggattcctaggttgttgtgttactggacgaggtggttgtccagaaggagtcagaga |
9743342 |
T |
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| Q |
118 |
tggtggtggtgtggtaagagttggtggtttggcaggagtcgtcttaggtggttgtgatgtggtaggagtcggtggtgttataggagttatcttaggtgat |
217 |
Q |
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| T |
9743341 |
tggtggtggtgtggtaagagttggtggtttggcaagagtcgtcttaggtggttgtgatgtggtaggagtcggtggtgttataggagttatcttaggtggt |
9743242 |
T |
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| Q |
218 |
gatgtc |
223 |
Q |
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|||||| |
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| T |
9743241 |
gatgtc |
9743236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 48 - 223
Target Start/End: Complemental strand, 9742940 - 9742765
Alignment:
| Q |
48 |
gtgttgaagttggaggattcctaggttgttgtgttactggacgaggtggttgtccagaaggagtcagagttggtggtggtgtggtaagagttggtggttt |
147 |
Q |
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| T |
9742940 |
gtgttgaagttggaggattcctaggttgttgtgttactggacgaggtggttgtccagaaggagtcagagttggtggtggtgtggttagagttggtggttt |
9742841 |
T |
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| Q |
148 |
ggcaggagtcgtcttaggtggttgtgatgtggtaggagtcggtggtgttataggagttatcttaggtgatgatgtc |
223 |
Q |
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| T |
9742840 |
ggcaggagtcgtcttaggtggttgtgatttggtaggagtcggtggtgttataggagttatcttaggtggtgatgtc |
9742765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 134 - 216
Target Start/End: Complemental strand, 9743814 - 9743732
Alignment:
| Q |
134 |
agagttggtggtttggcaggagtcgtcttaggtggttgtgatgtggtaggagtcggtggtgttataggagttatcttaggtga |
216 |
Q |
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| T |
9743814 |
agagttggtgatttggcaggagtcgtcttaggtggttgtgatgtgataggagttggtggtgttataggagttatcttaggtga |
9743732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 75 - 122
Target Start/End: Complemental strand, 9743852 - 9743805
Alignment:
| Q |
75 |
gttgtgttactggacgaggtggttgtccagaaggagtcagagttggtg |
122 |
Q |
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| T |
9743852 |
gttgggttactggacgagttggttgtccagaaggagtcagagttggtg |
9743805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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