View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21101_low_1 (Length: 524)
Name: NF21101_low_1
Description: NF21101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21101_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 478; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 17 - 514
Target Start/End: Complemental strand, 35929616 - 35929119
Alignment:
| Q |
17 |
ctgtgatgaagatacagtacaactgcataaacggcaacaataagatagaggacaaaatatatttatcattaagtttaaaagttaatcacaaagtgctaaa |
116 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35929616 |
ctgtgatgaagatacagtacaagtgcataaacggcaacaataagttagaggacaaaatatatttatcattaagtttaaaagttaatcacaaagtgctaaa |
35929517 |
T |
|
| Q |
117 |
ttgttaaataacttgatatgtgtctagaaaaagggaaacaaggacaatccattacattcaaggagaaactatattaaatcagccggctgatcattgcctg |
216 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35929516 |
ttgttaaataacttgatatgtgtctagaaaaagggaaacaaggacaatccattacattcaaggagaaactatattaaatcagccggctgatcattgcctg |
35929417 |
T |
|
| Q |
217 |
gtcaatactagtgtcatcgttctcttgtttctttcacatgcctccaaccacaacaaaacaagccctaaaatactttcactgttttgtatctataaataga |
316 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35929416 |
gtcaatactaatgtcatcgttctcttgtttctttcacatgcctccaaccacaacaaaacaagccctaaaatactttcactgttttgtatctataaataga |
35929317 |
T |
|
| Q |
317 |
tagaaactaagatatatggaaaccaagttgagaataagatggagaaggtttctctttatgcttgtttactactcagcgtgagttttttggttatttttcc |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35929316 |
tagaaactaagatatatggaaaccaagttgagaataagatgaagaaggtttctctttatgcttgtttactactcagcgtgagttttttggttatttttcc |
35929217 |
T |
|
| Q |
417 |
atatagcaaagctagtcaaactgataaacttgatgagtttattctttctagaacctcacagaatcctcctaagactctttcttgggaagaggatgatg |
514 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
35929216 |
atatagcaaagctagtcaaactgataaacttgatgagtttattctttctagaacctcacagaatcctcctaagactctttcttgggaagaggaagatg |
35929119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 22 - 508
Target Start/End: Complemental strand, 35936261 - 35935768
Alignment:
| Q |
22 |
atgaagatacagtacaactgcataaacggcaacaataagatagaggacaaaatatatttatcattaagtttaaaagttaatcacaaagtgctaaattgtt |
121 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||| ||||||| ||| ||||| |||||| ||| ||||||||| |||||||||||||||||| |
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| T |
35936261 |
atgaagatacagtacaactgcatcaaccacaacaataagttagaggaaaaagtatat----cattaactttcaaagttaatgacaaagtgctaaattgtt |
35936166 |
T |
|
| Q |
122 |
aaataacttgatatgtgtctagaaaaagggaaacaaggacaatccattacattcaaggagaaactatattaaatc-agccggctgatcattgcctggtca |
220 |
Q |
| |
|
|||||||||| |||| |||| ||| |||||||||| ||||||||||| |||||||| |||||||| |||||| | |||||||||||| |||| |||||| |
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|
| T |
35936165 |
aaataacttgttatgattctacaaacagggaaacaaagacaatccattgcattcaagaagaaactaaattaaaaccagccggctgatc-ttgcatggtca |
35936067 |
T |
|
| Q |
221 |
-------atactagtgtcatcgttctcttgtttctttcacatgcctccaaccacaacaaaacaagccctaaaatactttcactgttttgtatctataaat |
313 |
Q |
| |
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||| || ||| ||| |||||||||||||||||||| |||||| ||||||||||||| | | || | | ||||||||| ||||||||||| |
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| T |
35936066 |
gtagtcaatagtaatgttatcacactcttgtttctttcacatgc-tccaacaacaacaaaacaagtcatgcaaaattgccactgttttttatctataaat |
35935968 |
T |
|
| Q |
314 |
ag----ata-gaaactaagatatatggaaa-ccaagttgagaataagatggagaaggtttctctttatgcttgtttactactcagcgtgagttttttggt |
407 |
Q |
| |
|
|| ||| |||||| || ||||| ||| |||| || |||| |||||| |||| |||||||||||||||||||| |||||| | ||||| | ||||| |
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| T |
35935967 |
agtaagataagaaacttag-tatatacaaaaccaacttaagaacaagatgaagaaaatttctctttatgcttgtttattactcaacttgagtctcttggt |
35935869 |
T |
|
| Q |
408 |
tatttttccatatagcaaagctagtcaaactgataaacttgatgagtttattctttctagaacctcacagaatcctcctaagactctttcttgggaagag |
507 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||||||||| || |||| ||||||| |||||||||||||| ||||||||||||||||||||| |
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|
| T |
35935868 |
tatttttccttatagcaaagctagtcaagctgataaacttgatgagctttttctgtctagaaaatcacagaatcctcccaagactctttcttgggaagag |
35935769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 293 - 514
Target Start/End: Complemental strand, 35912013 - 35911791
Alignment:
| Q |
293 |
cactgttttgtatctataaatagatagaaactaa-gatatatggaaaccaagttgagaataagatggagaaggtttctctttatgcttgtttactactca |
391 |
Q |
| |
|
||||||||| |||||||||||| |||||||| | ||||||| ||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
35912013 |
cactgtttttcatctataaatagttagaaacttatgatatattgaagccaagttgagaacaagatgaagaaggtttctctttatgcttgtttactactca |
35911914 |
T |
|
| Q |
392 |
gcgtgagttttttggttatttttccatatagcaaagctagtcaaactgataaacttgatgagtttattctttctagaacctcacagaatcctcctaagac |
491 |
Q |
| |
|
| ||||| | |||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
35911913 |
acttgagtctattggttatttttccatattgcaaagctagtcaagctgataaacttgttgagtttattctgtctagaacctcacagaatcctcctaagac |
35911814 |
T |
|
| Q |
492 |
tctttcttgggaagaggatgatg |
514 |
Q |
| |
|
|||||| ||||||||||| |||| |
|
|
| T |
35911813 |
tctttcatgggaagaggaagatg |
35911791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 83 - 508
Target Start/End: Complemental strand, 35916641 - 35916184
Alignment:
| Q |
83 |
cattaagtttaaaagttaatcacaaagtgctaaattgttaaataacttgatatgtgtctagaaaaagggaaacaaggacaatcc-----attacattcaa |
177 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||| |
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|
| T |
35916641 |
cattaactttcaaagttaatcacaaagtgctaaaacgttaaataacttgatatgattctagaaaaagggaaacaatgacaatcccttacattacattcaa |
35916542 |
T |
|
| Q |
178 |
ggagaa---actatattaaatc-agccggctgatcattgcctgg---------------tcaatactag-tgtcatcgttctcttgtttctttcacatgc |
257 |
Q |
| |
|
|||||| |||| |||||| ||||||||||||| ||| ||| ||||| ||| ||| ||| |||||||||||||||||||| |
|
|
| T |
35916541 |
ggagaagaaactaaattaaacatagccggctgatcaatgcatggacattggtcaatgcctcaatggtagatgttatctctctcttgtttctttcacatgg |
35916442 |
T |
|
| Q |
258 |
ctccaaccacaacaa---aacaagccctaaaatactttcactgttttgtatctataaatagatagaaactaa-gatatatggaaaccaagttgagaataa |
353 |
Q |
| |
|
||||||| | ||||| || ||| ||| || | | ||| |||||| |||||||||||| |||||||| | ||||||| |||||||||||||||| || |
|
|
| T |
35916441 |
ctccaacaagaacaaccaaataagtccttcaaaattgtcaatgtttttcatctataaatagttagaaacttatgatatattgaaaccaagttgagaacaa |
35916342 |
T |
|
| Q |
354 |
gatggagaaggtttctctttatgcttgtttactactcagcgtga---gttttttggttatttttccatatagcaaagctagtcaaactgataaacttgat |
450 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||| ||| || ||||||||||||||||||||||||||||||||||| |||||||||| || |
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|
| T |
35916341 |
gatgaagaaggtttctctttatgcttgtttattactcaatttgatcagtcttttggttatttttccatatagcaaagctagtcaagctgataaactcaat |
35916242 |
T |
|
| Q |
451 |
gagtttattctttctagaacctcacagaatcctcctaagactctttcttgggaagagg |
508 |
Q |
| |
|
||||||||||| ||||||| || ||||||||||||||||| |||||||||||||||| |
|
|
| T |
35916241 |
gagtttattctgtctagaaaatctcagaatcctcctaagacactttcttgggaagagg |
35916184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 329 - 508
Target Start/End: Complemental strand, 35941497 - 35941318
Alignment:
| Q |
329 |
tatatggaaaccaagttgagaataagatggagaaggtttctctttatgcttgtttactactcagcgtgagttttttggttatttttccatatagcaaagc |
428 |
Q |
| |
|
||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||| | ||||||| |||||||||||||||||||||||||| |
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|
| T |
35941497 |
tatatagaaatcaagttgagaacaagatggagaaggtttctctttatgcttgtttaatactcaacttgagtttattggttatttttccatatagcaaagc |
35941398 |
T |
|
| Q |
429 |
tagtcaaactgataaacttgatgagtttattctttctagaacctcacagaatcctcctaagactctttcttgggaagagg |
508 |
Q |
| |
|
||||||| |||||||||| ||||||||||||| ||||||| || ||||||||||| |||||||||||||||||||||| |
|
|
| T |
35941397 |
tagtcaagctgataaactcaatgagtttattctgtctagaaaatctcagaatcctcccaagactctttcttgggaagagg |
35941318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 304 - 508
Target Start/End: Complemental strand, 35922658 - 35922453
Alignment:
| Q |
304 |
atctataaatagatagaaactaa-gatatatggaaaccaagttgagaataagatggagaaggtttctctttatgcttgtttactactcagcgtgagtttt |
402 |
Q |
| |
|
|||||||||| | |||||||| | ||||| | |||||||||||||||| |||||| |||||||||||||||||||||||||| |||||| | |||| || |
|
|
| T |
35922658 |
atctataaattgttagaaacttatgatatgttgaaaccaagttgagaacaagatgaagaaggtttctctttatgcttgtttattactcaacttgagcctt |
35922559 |
T |
|
| Q |
403 |
ttggttatttttccatatagcaaagctagtcaaactgataaacttgatgagtttattctttctagaacctcacagaatcctcctaagactctttcttggg |
502 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||| || ||||||||||| ||||| |||||||||| |
|
|
| T |
35922558 |
ttggttatttttccatatagcaaagctagtcaagctgataaactcaatgagtttattctgtctagaaaatctcagaatcctcccaagacactttcttggg |
35922459 |
T |
|
| Q |
503 |
aagagg |
508 |
Q |
| |
|
|||||| |
|
|
| T |
35922458 |
aagagg |
35922453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 38 - 176
Target Start/End: Complemental strand, 35922909 - 35922772
Alignment:
| Q |
38 |
actgcataaacggcaacaataagatagaggacaaaatatatttatcattaagtttaaaagttaatcacaaagtgctaaattgttaaataacttgat---a |
134 |
Q |
| |
|
||||||||||| |||||||||| ||||||| |||||||| |||||| ||| ||||||||||||||||| ||||||| ||||||| |||||| | |
|
|
| T |
35922909 |
actgcataaaccacaacaataagttagaggaacaaatatat----cattaactttcaaagttaatcacaaagttctaaattattaaataccttgatacca |
35922814 |
T |
|
| Q |
135 |
tgtgtctagaaaaagggaaacaaggacaatccattacattca |
176 |
Q |
| |
|
|| |||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
35922813 |
tgattctagaaaaagggaaacaaggaaaatcacttacattca |
35922772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 35912219 - 35912129
Alignment:
| Q |
83 |
cattaagtttaaaagttaatcacaaagtgctaaattgttaaataacttgat--atgtgtctagaaaaagggaaacaaggacaatccattac |
171 |
Q |
| |
|
|||||| ||| ||||||||||||| ||| ||||| |||||||||||||||| ||| |||||||||| ||||||||| |||||||||||| |
|
|
| T |
35912219 |
cattaactttcaaagttaatcacatagtactaaaatgttaaataacttgatacatgattctagaaaaacggaaacaagaacaatccattac |
35912129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 94 - 183
Target Start/End: Complemental strand, 35941721 - 35941632
Alignment:
| Q |
94 |
aaagttaatcacaaagtgctaaattgttaaataacttgat--atgtgtctagaaaaagggaaacaaggacaatccattacattcaaggagaa |
183 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||| ||||||| || | ||||||||||||||||| |
|
|
| T |
35941721 |
aaagttaattacaaagtgctaaattgttaaataacttgatacatgattctagaaaaaggaaaacaag--aaaacaattacattcaaggagaa |
35941632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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