View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21102_low_1 (Length: 801)
Name: NF21102_low_1
Description: NF21102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21102_low_1 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 691; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 691; E-Value: 0
Query Start/End: Original strand, 14 - 784
Target Start/End: Complemental strand, 21993108 - 21992340
Alignment:
| Q |
14 |
catcacagtttgctcttctaactgcaaaagaaataaacaaaattcaacgtgaattcagtactcatttcttgctctatatgtatatgcaattgagtttgtg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21993108 |
catcacagtttgctcttctaactgcaaaagaaataaacaaaactcaacgtgaattcagtactcatttcttgctctatatgtatatgcaattgagtttgtg |
21993009 |
T |
|
| Q |
114 |
atgattat---agatggcctcagcatatcataatgcattgtccctacaaccggtcatcttcatggtgagatttagtaaaattttaagttgtcaatatata |
210 |
Q |
| |
|
|||||||| |||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
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|
| T |
21993008 |
atgattattatagatagcctcaacatataataatgcattgtccctacaaccggtcatcttcatggtgagatttagtaaa-ttttacgttgtcaatatata |
21992910 |
T |
|
| Q |
211 |
gtatttaaagtctaaattattacctccaatcattctcagataaatacttatatgatcacaagcttaaataaaaccaatttaggaacacacataacaatac |
310 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21992909 |
gta----aagtctaaattattacctccaatcattctcagataaatacttatatgatcacaagcttaaataaaaccaatttaggaacacacataacaatac |
21992814 |
T |
|
| Q |
311 |
attttatttaattaagtgaaaaatacacattattaaattgttttatattgtaccttttttaagttgtgtgagtgtgcctaaatgaattatatttggggtt |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21992813 |
attttatttaattaagtgaaaaatacacattattaaattgttttatattgtaccttttttaagttgtgtgagtgtgcctaaatgaattatatttggggtt |
21992714 |
T |
|
| Q |
411 |
gtgactagtgttcctctcatttgaattgactatagtaaggaagccatgcttttgatacaatcatctaagccgtcagattaagatcggaccactcaagtaa |
510 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
21992713 |
gtgaccggtgttcctctcatttgaattgactatagtaaggaagttatgcttttgatacagtcatctaagccgtcagattaagatcggacgactcaagtaa |
21992614 |
T |
|
| Q |
511 |
gtcgcatccaaaatataaagtttgagcatgagtcgtccgaacttagtcaaatagttcatattagcaattgcgtgattgcatgaacgcggagaatctaaat |
610 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21992613 |
gtcgcatccaaaatataaagtttgagcatgagtcgtccgaacttagtcaaatagttcatattagcaattgcgtgattgcatgaacgcggagaatctaaat |
21992514 |
T |
|
| Q |
611 |
tgaatattatactaaaaatatagaagagtataaatgtgaacttacacttgcaagtggcttcacatttgctgctgcagtcaatgaaacaacctttatcctt |
710 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21992513 |
tgaatattatactaaaaatatagaagagtataaatgtgaacttacacttgcaagtggcttcacatttgctgctgcagtcaatgaaacaacctttatcctt |
21992414 |
T |
|
| Q |
711 |
cttgttcttctttggcttcctggttttgcactctgctggacacacaagggtcgcgaaatgacaggtattgtttg |
784 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21992413 |
cttgttcttctttggcttcctggttttgcactctgctggacacacaagggtcgcgaaatgacaggtattgtttg |
21992340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 644 - 779
Target Start/End: Complemental strand, 22009857 - 22009725
Alignment:
| Q |
644 |
atgtgaacttacacttgcaagtggcttcacatttgctgctgcagtcaatgaaacaacctttatccttcttgttcttctttggcttcctggttttgcactc |
743 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||| |
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|
| T |
22009857 |
atgtgaacttacacttgcaagtggcttcacatttgttgc---agtcaatgaaacaacctttatcctttttgttcttctttggcttcctttgtttacactc |
22009761 |
T |
|
| Q |
744 |
tgctggacacacaagggtcgcgaaatgacaggtatt |
779 |
Q |
| |
|
| | ||||||||||| ||| ||||||||| ||||| |
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|
| T |
22009760 |
ttccggacacacaagtgtcttgaaatgacaagtatt |
22009725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 4e-25; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 296 - 415
Target Start/End: Original strand, 12642542 - 12642661
Alignment:
| Q |
296 |
cacacataacaatacattttatttaattaagtgaaaaatacacattattaaattgttttatattgtaccttttttaagttgtgtgagtgtgcctaaatga |
395 |
Q |
| |
|
|||||||||||||||||||||||| |||| | ||||| |||||||||||||||||||| ||| ||||||||| || ||||||||||||||||| | | |
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|
| T |
12642542 |
cacacataacaatacattttattttattatttcaaaaacacacattattaaattgttttctatcgtaccttttcaaaattgtgtgagtgtgcctagacaa |
12642641 |
T |
|
| Q |
396 |
attatatttggggttgtgac |
415 |
Q |
| |
|
|||||||||| |||||||| |
|
|
| T |
12642642 |
attatatttgaagttgtgac |
12642661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 300 - 414
Target Start/End: Original strand, 21179217 - 21179331
Alignment:
| Q |
300 |
cataacaatacatttt-atttaattaagtgaaaaatacacattattaaattgttttatattgtaccttttttaagttgtgtgagtgtgcctaaatgaatt |
398 |
Q |
| |
|
|||||||||||||||| ||||||||| | ||||||| | |||||||||||||||| ||| | |||||||| ||||| ||| | | | || ||||||| | |
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|
| T |
21179217 |
cataacaatacattttcatttaattatggtaaaaataaatattattaaattgttttctatcgcacctttttcaagttttgtaaat-ttcccaaatgaact |
21179315 |
T |
|
| Q |
399 |
atatttggggttgtga |
414 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
21179316 |
ttatttggggttgtga |
21179331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 8e-17; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 252 - 417
Target Start/End: Original strand, 32549499 - 32549664
Alignment:
| Q |
252 |
aaatacttatatgatcacaagcttaaataaaaccaatttaggaacaca--cataacaatacattttatttaattaagtgaaaaatacacattattaaatt |
349 |
Q |
| |
|
||||||||| ||| | |||||| ||||||||| | ||||||||||| |||||||| |||| | ||||||||| | ||| |||||||||||||| |
|
|
| T |
32549499 |
aaatacttacatggttacaagcctaaataaaaatcacttaggaacacaaacataacaacacatatcatttaattatttcaaattaccacattattaaatt |
32549598 |
T |
|
| Q |
350 |
gttttatattgtaccttttttaagttgtgtgagtgtgcctaaatgaattatatttggggttgtgacta |
417 |
Q |
| |
|
||||| |||| |||||||| |||||||| |||||||| |||||| |||||||| |||||||||||| |
|
|
| T |
32549599 |
gttttctatttcacctttttcaagttgtg--agtgtgcccaaatgatttatatttagggttgtgacta |
32549664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 351 - 415
Target Start/End: Original strand, 32340074 - 32340138
Alignment:
| Q |
351 |
ttttatattgtaccttttttaagttgtgtgagtgtgcctaaatgaattatatttggggttgtgac |
415 |
Q |
| |
|
|||| ||||||| ||||||||| ||||||||| |||| ||||||||||||||| |||||||||| |
|
|
| T |
32340074 |
ttttctattgtatcttttttaaattgtgtgagggtgctcaaatgaattatatttagggttgtgac |
32340138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 287 - 411
Target Start/End: Original strand, 29211883 - 29212011
Alignment:
| Q |
287 |
atttaggaacacacataacaatacattttatttaa----ttaagtgaaaaatacacattattaaattgttttatattgtaccttttttaagttgtgtgag |
382 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||| ||| | ||||||||| ||| ||| ||| |||| |||| ||||||||| || ||||||||| |
|
|
| T |
29211883 |
atttaggcacacacataacaatacatattatttaattatttatttcaaaaatacatatttttagattcttttctattttacctttttcaatttgtgtgag |
29211982 |
T |
|
| Q |
383 |
tgtgcctaaatgaattatatttggggttg |
411 |
Q |
| |
|
|||| | |||| | | |||||| |||||| |
|
|
| T |
29211983 |
tgtgtccaaataattcatatttagggttg |
29212011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 295 - 415
Target Start/End: Original strand, 29209312 - 29209433
Alignment:
| Q |
295 |
acacacataacaatacattttatttaattaagtgaaaaatacacattattaaattgttttatattgtaccttttttaa-gttgtgtgagtgtgcctaaat |
393 |
Q |
| |
|
||||||||||||||||| ||||||||||| | ||||||| ||||| ||||||| |||| |||| || ||||| || |||||||| |||| | |||| |
|
|
| T |
29209312 |
acacacataacaatacacattatttaattatttcaaaaataaacatttttaaattcttttctattttatatttttcaattttgtgtgaatgtgtccaaat |
29209411 |
T |
|
| Q |
394 |
gaattatatttggggttgtgac |
415 |
Q |
| |
|
| |||||||| |||||||||| |
|
|
| T |
29209412 |
aatttatatttagggttgtgac |
29209433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 295 - 384
Target Start/End: Original strand, 38572329 - 38572418
Alignment:
| Q |
295 |
acacacataacaatacattttatttaattaagtgaaaaatacacattattaaattgttttatattgtaccttttttaagttgtgtgagtg |
384 |
Q |
| |
|
|||||||||| ||||||||||||||||||| | ||||||| ||| ||||||||||||||||||| | | |||| || ||||||||||| |
|
|
| T |
38572329 |
acacacataataatacattttatttaattattttaaaaataaacactattaaattgttttatatttttctattttaaaattgtgtgagtg |
38572418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 295 - 343
Target Start/End: Complemental strand, 2296401 - 2296353
Alignment:
| Q |
295 |
acacacataacaatacattttatttaattaagtgaaaaatacacattat |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
2296401 |
acacacataacaatacattttatttaattatgtcaaaaatacacattat |
2296353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 295 - 343
Target Start/End: Complemental strand, 2312215 - 2312167
Alignment:
| Q |
295 |
acacacataacaatacattttatttaattaagtgaaaaatacacattat |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
2312215 |
acacacataacaatacattttatttaattatgtcaaaaatacacattat |
2312167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 340 - 415
Target Start/End: Complemental strand, 2312145 - 2312072
Alignment:
| Q |
340 |
ttattaaattgttttatattgtaccttttttaagttgtgtgagtgtgcctaaatgaattatatttggggttgtgac |
415 |
Q |
| |
|
||||| ||||||||| |||||||||||||| ||||| ||||| ||||| |||||||||||||||||||| |||| |
|
|
| T |
2312145 |
ttattcaattgttttctattgtacctttttcaagttttgtgaatgtgc--gaatgaattatatttggggttttgac |
2312072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 273 - 354
Target Start/End: Complemental strand, 4763429 - 4763347
Alignment:
| Q |
273 |
cttaaataaaaccaatttaggaacac-acataacaatacattttatttaattaagtgaaaaatacacattattaaattgtttt |
354 |
Q |
| |
|
||||||||||| |||||||| ||| || ||||||| |||||||||||||| || |||||||||||||| |||| |||||| |
|
|
| T |
4763429 |
cttaaataaaaggaatttaggcacaagacgtaacaatgcattttatttaattttgtcaaaaatacacattagtaaactgtttt |
4763347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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