View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21102_low_2 (Length: 642)
Name: NF21102_low_2
Description: NF21102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21102_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 416; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 178 - 609
Target Start/End: Complemental strand, 4138492 - 4138061
Alignment:
| Q |
178 |
cataaattggactcatctaaatgatgctattgtaccaactatacctggtgacataaacagttgttggtcaggttcagccactatactcccaggtgaaaaa |
277 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4138492 |
cataaattggactcatctaaatgatgctattgtaccaactatacctggtgacataaacagttgttggtcaggttcagccactatactcccaggtgaaaaa |
4138393 |
T |
|
| Q |
278 |
cctgctatgttgtatacaggaattgatcaaaatagacaccaagttcaaaacttagccatgccaaagaatctgtctgatccttacttgagggaatgggcaa |
377 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| || |
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| T |
4138392 |
cctgctatgttgtatacaggaattgatcaaaatagacaccaagttcaaaatttagccatgccaaagaatctgtctgatccttacttaagggaatgggaaa |
4138293 |
T |
|
| Q |
378 |
aacatcctcaaaatcctttgatgactccacctagtggagttgaagtcggtgaattccgagatccttcaactgcatggcaaggaaaggatggaaaatggag |
477 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4138292 |
aacatcctcaaaatcctttgatgactccacctagtggagttgaagtcggtgaattccgagatccttcaactgcatggcaaggaaaggatggaaaatggag |
4138193 |
T |
|
| Q |
478 |
ggtaatcattggtgctcaaaatggagatgaaggaaaaattattctttacaaaagtgaggattttgttaagtggatagtggatcctatacctttctttgca |
577 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4138192 |
ggtaattattggtgctcaaaatggagatgaaggaaaaattattctttacaaaagtgaggattttgttaagtggatagtggatcctatacctttctttgca |
4138093 |
T |
|
| Q |
578 |
acagatgataccggagtttgtgaatgtccaga |
609 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
4138092 |
acagatgataccggagtttgtgaatgtccaga |
4138061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 178 - 606
Target Start/End: Complemental strand, 4129776 - 4129348
Alignment:
| Q |
178 |
cataaattggactcatctaaatgatgctattgtaccaactatacctggtgacataaacagttgttggtcaggttcagccactatactcccaggtgaaaaa |
277 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4129776 |
cataaattggactcatctaaatgatgctattgtaccaactatacctggtgacataaacagttgttggtcaggttcagccactatactcccaggtgaaaaa |
4129677 |
T |
|
| Q |
278 |
cctgctatgttgtatacaggaattgatcaaaatagacaccaagttcaaaacttagccatgccaaagaatctgtctgatccttacttgagggaatgggcaa |
377 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| || |
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| T |
4129676 |
cctgctatgttgtatacaggaattgatcaaaatagacaccaagttcaaaatttagccatgccaaagaatctgtctgatccttacttaagggaatgggaaa |
4129577 |
T |
|
| Q |
378 |
aacatcctcaaaatcctttgatgactccacctagtggagttgaagtcggtgaattccgagatccttcaactgcatggcaaggaaaggatggaaaatggag |
477 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4129576 |
aacatcctcaaaatcctttgatgactccacctagtggagttgaagtcggtgaattccgagatccttcaactgcatggcaaggaaaggatggaaaatggag |
4129477 |
T |
|
| Q |
478 |
ggtaatcattggtgctcaaaatggagatgaaggaaaaattattctttacaaaagtgaggattttgttaagtggatagtggatcctatacctttctttgca |
577 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4129476 |
ggtaattattggtgctcaaaatggagatgaaggaaaaattattctttacaaaagtgaggattttgttaagtggatagtggatcctatacctttctttgca |
4129377 |
T |
|
| Q |
578 |
acagatgataccggagtttgtgaatgtcc |
606 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
4129376 |
acagatgataccggagtttgtgaatgtcc |
4129348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 226 - 609
Target Start/End: Complemental strand, 4118536 - 4118153
Alignment:
| Q |
226 |
tgacataaacagttgttggtcaggttcagccactatactcccaggtgaaaaacctgctatgttgtatacaggaattgatcaaaatagacaccaagttcaa |
325 |
Q |
| |
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|||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||| ||| | ||||||| |
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| T |
4118536 |
tgacatcaatagttgttggtcaggttcagcaactatactcccaggtgaaaaacctgctattttgtacacaggaattgatcactataagaatgaagttcag |
4118437 |
T |
|
| Q |
326 |
aacttagccatgccaaagaatctgtctgatccttacttgagggaatgggcaaaacatcctcaaaatcctttgatgactccacctagtggagttgaagtcg |
425 |
Q |
| |
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|||||||| || ||||||||||| | || ||| ||| |||||||||| |||||| |||||||||||| ||||||||||||||| ||||||||||| | |
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| T |
4118436 |
aacttagctataccaaagaatctaacagacgctttcttaagggaatgggaaaaacaccctcaaaatcctgtgatgactccacctactggagttgaagagg |
4118337 |
T |
|
| Q |
426 |
gtgaattccgagatccttcaactgcatggcaaggaaaggatggaaaatggagggtaatcattggtgctcaaaatggagatgaaggaaaaattattcttta |
525 |
Q |
| |
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| | || |||| ||||||||||||||||| ||||| |||||||||||||||||||| | |||||||||||||| |||||||| |||| |||||||| |
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| T |
4118336 |
ataactttagagacccttcaactgcatggcatggaaaagatggaaaatggagggtaattgtcggtgctcaaaatggtgatgaagggaaaaccattcttta |
4118237 |
T |
|
| Q |
526 |
caaaagtgaggattttgttaagtggatagtggatcctatacctttctttgcaacagatgataccggagtttgtgaatgtccaga |
609 |
Q |
| |
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| ||||||||||||| ||||| |||| |||| |||| | || || |||||||||||| |||| |||||||||||||||||||| |
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| T |
4118236 |
ccaaagtgaggatttcgttaattggacagtgaatccaaatccattttttgcaacagataatactggagtttgtgaatgtccaga |
4118153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 313 - 606
Target Start/End: Complemental strand, 4143097 - 4142804
Alignment:
| Q |
313 |
acaccaagttcaaaacttagccatgccaaagaatctgtctgatccttacttgagggaatgggcaaaacatcctcaaaatcctttgatgactccacctagt |
412 |
Q |
| |
|
||||||||||||| ||||||| ||||| ||| |||| || || ||| | || | |||||| |||||| |||||||||||||||||| || |||||| | |
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|
| T |
4143097 |
acaccaagttcaatacttagctatgccgaaggatctatcagaccctaagttaatagaatggataaaacaccctcaaaatcctttgatggctgcacctaat |
4142998 |
T |
|
| Q |
413 |
ggagttgaagtcggtgaattccgagatccttcaactgcatggcaaggaaaggatggaaaatggagggtaatcattggtgctcaaaatggagatgaaggaa |
512 |
Q |
| |
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||||||||||| ||||| || |||| ||||||||||||||||||||||| |||||||||||||| ||| | || ||||||| |||||| || |||||| |
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| T |
4142997 |
ggagttgaagtaggtgagtttagagacccttcaactgcatggcaaggaaaagatggaaaatggagagtactgataggtgctcgaaatggcgaacaaggaa |
4142898 |
T |
|
| Q |
513 |
aaattattctttacaaaagtgaggattttgttaagtggatagtggatcctatacctttctttgcaacagatgataccggagtttgtgaatgtcc |
606 |
Q |
| |
|
|| ||||||||||| |||||||||||||||||| ||||| || ||||||| || |||| ||||||||||| |||||| |||||||||||||| |
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|
| T |
4142897 |
aagctattctttacagaagtgaggattttgttaattggattgtagatcctaatccattctatgcaacagatggtaccggtgtttgtgaatgtcc |
4142804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 4138787 - 4138854
Alignment:
| Q |
1 |
acttatacaactagtagttatttgaatcctattataatttgatcaaatttcataggaaacagatgaag |
68 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4138787 |
acttatacaactagtagttatatgaatcctattataatttgatcaaatttcataggaaacagatgaag |
4138854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 102 - 183
Target Start/End: Original strand, 4138884 - 4138974
Alignment:
| Q |
102 |
gctaagagtatgaagcataccattaggatctgcaagatg---------gttttcaattttagtcagcaaaacatgtcaaatgatacataaa |
183 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4138884 |
gctaagagtatgaagcataccattaggatctgcatgatgaagatgatggttttcaattttagtcagcaaaacatgtcaaatgatacataaa |
4138974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 108 - 140
Target Start/End: Original strand, 4143458 - 4143490
Alignment:
| Q |
108 |
agtatgaagcataccattaggatctgcaagatg |
140 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |
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|
| T |
4143458 |
agtatgaagcataccattaggatctgcatgatg |
4143490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 237 - 354
Target Start/End: Complemental strand, 42875826 - 42875709
Alignment:
| Q |
237 |
gttgttggtcaggttcagccactatactcccaggtgaaaaacctgctatgttgtatacaggaattgatcaaaatagacaccaagttcaaaacttagccat |
336 |
Q |
| |
|
||||||||||||| ||||| || ||||| ||||||| ||||| || || || || ||||||||||||| ||||| || |||||||||||| ||||||| |
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|
| T |
42875826 |
gttgttggtcaggctcagcaacaatacttccaggtggcaaaccagcaattttatacacaggaattgatccaaataatcatcaagttcaaaacatagccat |
42875727 |
T |
|
| Q |
337 |
gccaaagaatctgtctga |
354 |
Q |
| |
|
|| || ||| ||||||| |
|
|
| T |
42875726 |
acccaaaaatatgtctga |
42875709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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