View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21102_low_3 (Length: 505)
Name: NF21102_low_3
Description: NF21102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21102_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 19 - 496
Target Start/End: Original strand, 49654320 - 49654797
Alignment:
| Q |
19 |
aagggaattgaaaatgctgagaagtgtaacggtaaaagcaagagtactaacacaaaaaccagtgctggctcaccggagaaatctccggctggtggtaagg |
118 |
Q |
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| T |
49654320 |
aagggaattgaaaatgctgagaagtgtaacggtaaaagcaagagtactaacacaaaaaccagtgctggctcaccggagaaatctccggctggtggtaagg |
49654419 |
T |
|
| Q |
119 |
ggcaggaaacaaagaacaggagtggtcaaagtggcggaggagattctggtaagaagaagatgaagaaaactcagagtggaactggaagcaatgggttgag |
218 |
Q |
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| T |
49654420 |
ggcaggaaacaaagaacaagagtggtcaaagtggcggaggagattctggtaagaagaagatgaagaaaactcagagtggaactggaagcaatgggttgag |
49654519 |
T |
|
| Q |
219 |
ttcagcatctactggtgcacctgcagacactggagcagaattccagtgtccaggtcaggttgtggggcaagtgaatctcagccctacacgtcagcaatcg |
318 |
Q |
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|||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49654520 |
ttcagcatctaccggtgcacctgcacacactggagcagaattccagtgtccaggtcaggttgtggggcaagtgaatctcagccctacacgtcagcaatcg |
49654619 |
T |
|
| Q |
319 |
tacatgttgtatccagaaacatgttatcctcctttggtacaatatgcaacttacaacagattatgtcccatgggaacaatgggttgtccttcttactatg |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49654620 |
tacatgttgtatccagaaacatgttatcctcctttggtacaatatgcaacttacaacagattatgtcccatgggaacaatgggttgtccttcttactatg |
49654719 |
T |
|
| Q |
419 |
ttccaccattaccctacatgtgtgcaggccttgatcgtgacccttatcagtttcaatctacacctttgattccctttg |
496 |
Q |
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| T |
49654720 |
ttccaccattaccctacatgtgtgcaggccttgatcgtgacccttatcagtttcaatctacacctttgattccctttg |
49654797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 150; Significance: 4e-79; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 315 - 496
Target Start/End: Original strand, 16486263 - 16486444
Alignment:
| Q |
315 |
atcgtacatgttgtatccagaaacatgttatcctcctttggtacaatatgcaacttacaacagattatgtcccatgggaacaatgggttgtccttcttac |
414 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
16486263 |
atcgtacatgttgtatgcagaaacatgttatcctcctttggtacaatatgtaacttacaacagattaggtcccattcgaacaatgggttgtccttcttac |
16486362 |
T |
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| Q |
415 |
tatgttccaccattaccctacatgtgtgcaggccttgatcgtgacccttatcagtttcaatctacacctttgattccctttg |
496 |
Q |
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| T |
16486363 |
tatgttccaccattaccctgcatgtgtacaggctttgatcgtgacccttatcagtttcaatctacacctttgattccctttg |
16486444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 150; Significance: 4e-79; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 315 - 496
Target Start/End: Complemental strand, 21816647 - 21816466
Alignment:
| Q |
315 |
atcgtacatgttgtatccagaaacatgttatcctcctttggtacaatatgcaacttacaacagattatgtcccatgggaacaatgggttgtccttcttac |
414 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
21816647 |
atcgtacatgttgtatgcagaaacatgttatcctcctttggtacaatatgtaacttacaacagattaggtcccattcgaacaatgggttgtccttcttac |
21816548 |
T |
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| Q |
415 |
tatgttccaccattaccctacatgtgtgcaggccttgatcgtgacccttatcagtttcaatctacacctttgattccctttg |
496 |
Q |
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||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21816547 |
tatgttccaccattaccctgcatgtgtacaggctttgatcgtgacccttatcagtttcaatctacacctttgattccctttg |
21816466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 317
Target Start/End: Complemental strand, 14381479 - 14381448
Alignment:
| Q |
286 |
caagtgaatctcagccctacacgtcagcaatc |
317 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
14381479 |
caagtgaatctcagccctacacgtcagcaatc |
14381448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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